Vigna unguiculata (cowpea): 114177733
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Entry
114177733 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114177733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114177733
03041 Spliceosome [BR:
vun03041
]
114177733
03009 Ribosome biogenesis [BR:
vun03009
]
114177733
03016 Transfer RNA biogenesis [BR:
vun03016
]
114177733
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114177733
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114177733
Spliceosome [BR:
vun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114177733
Complex C
U4/U6.U5 tri-SnRNP related factors
114177733
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
Pre-60S particles
Helicases
114177733
Transfer RNA biogenesis [BR:
vun03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114177733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
DUF7204
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114177733
NCBI-ProteinID:
XP_027919030
LinkDB
All DBs
Position
3:2378572..2387645
Genome browser
AA seq
981 aa
AA seq
DB search
MENEKKEPPSLGKRREPELPVTVPDTASKLKRPRSAERTCVHEVAVPSGYVSSKDSELHG
TLSNPLHKGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRD
RQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSE
VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHK
QPCHVVYTDFRPTPLQHYAFPIGGTGLYLVVDENEQFREDNFLKLHDTFGKQNSADGRRG
GKSGGRGGRGGNTSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTPE
EKETVEQVFRNAVLCLNEEDRCLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQ
YEKALPDIEKRVSKLEQEVTLLDASGEAEVSEYHKLKLEIAQLEKKMMAKIIRPEIILYF
LVPGRLVKIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPCSTENNSRPKPCPPRPG
EKGEMHVVPVQLPLISTLGKLRVSIPSDLRPLEARQSVLLAVQELVNRFPGGLPKLNPVK
DMDVRDSEIVELVNQIEEIEKKMFAHPMHKRQDVDQIKCFERKAEANHEIQQLKTKMRDS
QLQKFREELKNRSRVLKKLGHIDADGVVQLKGRAACLVDTGDELLVTELMFNGTFNDLDH
HQVAALASCFIPGDKSNEQIQLRTELAKPLQQLQDSARRIAEIQHECKLDINVDECVEST
VRPYLMDVIYSWSKGVNFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLEK
KFAAASESLRRGIMFANSLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgagaagaaggaaccaccgtcattgggaaagcgaagagaaccagaactccca
gttacagtgccagacacggcttcgaagctgaaacgacctcgcagcgctgagcgcacgtgc
gtccacgaggtcgccgttccgagcggttatgtctcaagcaaggactccgagctccacgga
actctctccaatcctctccacaagggtcccatggcgaagtcatatcccttcacactcgac
cccttccaacaggtttccatcgcgtgtttggagcgcaacgagtccgttctagtctccgcc
cacacctctgccggcaaaaccgccgttgccgaatacgccattgccatgtccttccgcgac
cggcagcgcgtcatctacacgtctccgctcaaggccctcagcaaccagaagtatcgtgag
ctcagccaggagttcaccgacgtcggcctcatgactggcgacgtcacgctctcaccgaac
gccacgtgtctcgtcatgaccaccgagattctccgcggaatgctctaccgaggctccgaa
gtcctgaaagaagtggcgtgggttatattcgatgaaattcactacatgaaggatcgcgaa
cgaggcgttgtatgggaagagagtataatttttctgcctccggcgattaagatggtgttt
ctctccgcaactatgtctaatgcgacggaatttgcggagtggatttgtaatatccacaag
cagccttgtcacgttgtgtacactgattttaggcctacgccgcttcagcactatgcgttt
cccatcggagggactgggctgtatttggttgtagatgagaatgaacagttcagggaggat
aattttctgaagctgcatgatacttttgggaagcagaattcggctgatgggaggagagga
gggaaaagcggtggaagaggtgggagaggtggcaatacttctggtggttctgacatttac
aagattgttaagatgataatggaacggaaattccaacctgttatcatctttagcttcagt
agaagagagtgtgaacaacatgcaatgtctatgtccaagcttgacttcaacaccccagaa
gaaaaggaaacagtggagcaagtttttcgaaatgcagtgctatgtttaaatgaggaagac
aggtgcttacctgctattgagctgatgctgcctcttcttcagcgcgggattgctgtccat
cattctggacttcttcctgttatcaaagaattggttgagcttcttttccaggaaggtctt
gtaaaagccctatttgctactgaaacatttgccatgggtttgaatatgccagcgaaaaca
gttgtattcactgctgttaagaagtgggatggtgatagtcaccgatatattgggtctggt
gaatatatacagatgagtggtagggctgggcgacgaggcaaagatgagcggggaatctgt
atcataatgattgatgaacagatggaaatgaataacctcaaagacatggttttgggtaaa
cctgctcctttagtcagtactttcaggcttagctactactcaattttaaatttgatgagc
cgtgcagagggtcagttcactgcggaacacgtaatacgaaattcatttcaccaatttcag
tatgaaaaggccttaccagatatagagaagagggtgtcaaagctggagcaggaggtaact
ttgcttgatgcttcaggggaggctgaagtgtctgagtatcataagctaaaattggaaata
gcacagttggagaagaagatgatggcaaaaataattaggccagaaataatcctttatttc
cttgtccctggtcgattggtcaaaatcagagaaggtggaactgattggggctggggtgtt
gtagtcaatgttgttaaaaaaccttctggaggtggttatatagttgatactttacttcat
tgttcaccttgttcaactgaaaacaattcacggccaaaaccatgtccacctcgccctgga
gagaaaggtgaaatgcatgtggtccctgttcaattaccattaatatctactcttggtaaa
ctgagggtatctataccttctgatctccgacccttggaagcaaggcagagtgtacttctt
gctgtacaggagctggtcaatcgatttccaggaggtcttccaaagctcaaccctgtaaag
gacatggacgtacgggactcagagatagttgaactagttaatcaaatagaggaaattgag
aagaaaatgtttgctcatcctatgcataagcgccaagatgtggatcaaataaaatgcttt
gagaggaaagcagaggcgaatcatgaaattcagcaactgaagacaaaaatgcgggattct
cagctgcaaaaatttcgtgaagaattaaagaatcgctcccgagtcttaaagaagcttggt
catattgatgctgatggtgtagttcagttgaagggacgggcagcctgcttggttgacaca
ggggatgagctccttgttactgaattgatgtttaatggtacttttaatgaccttgaccac
catcaagttgctgctcttgcaagttgtttcatcccaggagataaatcaaatgagcagata
caactaagaacagagcttgcaaagcccttgcaacaacttcaagatagtgcaagaaggata
gcagaaattcaacatgaatgcaaattggatataaatgtggatgagtgtgttgaatcaaca
gtaaggccatacttgatggatgtgatatactcctggtcaaagggagtaaattttgctgag
attatacaaatgactgacatctttgagggaagtatcattcggagtgctagaaggcttgat
gagtttctgaaccagttgcgtgctgctgcaaatgcagttggagaggctgacttggagaag
aaatttgcagctgcaagtgaaagccttcgacgaggcattatgtttgcaaattctctatat
ttgtga
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