Vigna unguiculata (cowpea): 114178479
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Entry
114178479 CDS
T06017
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114178479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114178479
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114178479
Spliceosome [BR:
vun03041
]
Complex C
Other components
Step II factors
114178479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
ABC_tran
AAA_30
SLFN-g3_helicase
nSTAND3
AAA_16
SRP54
ATPase_2
AAA_29
FtsK_SpoIIIE
Ribosomal_L32e
T2SSE
PhoH
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
114178479
NCBI-ProteinID:
XP_027920213
LinkDB
All DBs
Position
3:20093183..20101683
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AA seq
696 aa
AA seq
DB search
MVSLPIVQYEEKIIETVERNAVVVVIGETGSGKSTQLSQMLHRRGYGKIAVTQPRRVAAV
SVARRVAQELGVQLGEEVGYAIRFEDRTSHNTRIKYLTDGVLLRESLANPELREYSVIIL
DEAHERSLNTDILMGLMKRLVKVRSSDLKVLITSATLDGDKVSKFFADCPVLNIPGKLYP
VEVLYSSERPSSYLESSLKTALDIHIRQPEGDILIFMTGQDDIEKLVSKLEDKVRALEEG
SCMDAIILPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSGMYSLDVVQISKVQANQRAGRAGRTCPGKCYRLYPSRVYNDEFLDVTVPEIQR
SSLAGSVLYLKSLDLPDIDILKFDFLDPPSFESLQDALKQLFLIDAIDENGAITSFGQKM
AELPLEPSLARTLMEANNQGCLSEALTVAAMLSAETTLLPVQRKTEKKRKHSISNLADGS
GLGDHIHLLHIYQCWDQTDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPLDVK
ANGKREEFRQDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQGQVVQVHPSSVLSLDDQ
GKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPIINKLKTLDVYKLSGGIHHVEEEPVKN
LPDLPKMDVEVPSTADDRESRIQAARERFLARKGKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtttctcttcccatagtccaatatgaagaaaaaatcatcgaaaccgttgagcggaac
gccgttgtcgttgtcatcggggagacggggtccggcaagagcactcaactctctcagatg
cttcaccgccgcggctacggcaaaatcgccgtcactcagccacgtcgagttgccgccgtc
tccgtcgccagacgagtcgcacaagaactcggcgttcagctcggcgaggaagtaggttac
gccattcgatttgaggataggacttctcacaacacgcgcataaagtatcttactgatgga
gtgctgctacgtgaaagtctggcaaatcctgagttgcgtgagtattctgttattatattg
gatgaggcgcatgaacggagtttaaacacggatatattgatgggtctgatgaaacgcctg
gttaaagttcgttcatctgatctcaaagttttgattacgtctgcgactcttgatggcgat
aaagtatccaagttctttgctgattgtccggtattgaacatcccgggaaagttgtatcca
gttgaggttctttatagcagtgagcgtccctcgagctatctcgagtcttcgctgaagaca
gctcttgatatacatattcgccaacccgaaggggatattttaatattcatgactggacag
gatgacatagagaagttggtatctaagttagaagataaggttcgtgctcttgaggaaggt
tcctgcatggatgctataatccttcccctacatggttctctaccccctgaattgcaggtg
cgtgtatttagtcctccccctccaaattgtaggcgaattatagttgcgacaaatattgct
gaaacttccttgactgtggatggtgtagtgtatgttattgactctgggtatgtgaagcaa
agacaatacaatccatccagtggcatgtattctcttgatgttgttcaaataagcaaagtg
caagctaaccagcgtgcaggccgagctggacgaacatgtcctgggaaatgctaccgacta
tatccctcccgtgtttacaatgatgagtttttggatgtcacagttccagaaattcagaga
tcttccctcgctggcagtgttctttacttgaagtcattggacctcccagatattgacatt
ctaaaatttgactttctggatcctccatcatttgagtccttacaagatgccttgaagcag
ttatttctgattgatgctatagatgaaaatggtgcaattacaagttttggacagaaaatg
gctgagcttccattagaaccatccttagcaagaactttaatggaggcaaacaatcaaggt
tgcttatctgaggctttgactgttgctgccatgttgtcagctgagactacattgctacct
gtgcagagaaagactgagaaaaagaggaaacactcaatatctaaccttgctgatggttct
ggattgggtgatcacattcatttgctacacatataccaatgctgggatcaaactgatttt
gacattggatggtgcaaagataacggcttgcaggtgcgagggatgttgtttgtcagagat
gtccgtaagcagttatcccagataatgcagaaaatatcaaagggaccactggatgtaaag
gctaatgggaaaagagaagagttcagacaagattatcgaaatttgaggaaggctttatgt
gtgggctatgcaaatcagctggctgaaagaaagatgcatcacaatggttatcgaactctg
ggttttcaaggtcaagtagtccaggtgcatccatcatctgtattgagtcttgatgaccag
ggaaagttcccagactatgttgtgtaccatgaattaattgcaacgccacgtccatacatg
agaaatgtatgtgctgttgagatgagatgggttatacccattattaacaagctcaagacc
ctggatgtgtacaaattaagtggtggtattcatcatgttgaggaggaacctgtgaaaaat
cttccagatttacccaagatggatgttgaggttcccagtactgctgatgatcgtgaaagc
agaatccaagctgctagagaacgatttcttgctcgaaaaggcaaaaaatga
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