Vigna unguiculata (cowpea): 114179146
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Entry
114179146 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114179146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114179146
03012 Translation factors [BR:
vun03012
]
114179146
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114179146
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114179146
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114179146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_16
AAA_19
ATPase
Dicer_dimer
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
114179146
NCBI-ProteinID:
XP_027921180
LinkDB
All DBs
Position
3:complement(472134..484245)
Genome browser
AA seq
1200 aa
AA seq
DB search
MKSASVCAVQPLSAVTTMPMAYSGVFQGFIRFKTMSRLRCTPLRPYFSSISTTPLHRTAI
RLRSSSNALQVVNVTRPRTVARQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASYPS
HSQQVGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQY
ARVVVFSKAPLPNYRPDLDDKRPQREVVLPFDVHKEVDARLHAHLSQKATASKWSYLNDS
LHKSSDAISIPANEGMHEQPEPLTHNSVVKEKILQRRSLQLRHRQQDWQESHEGQKMLEF
RRSLPAFKEKDAFLRLISENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQ
PRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRNLK
GVTHVIVDEIHERGMNEDFLLIVLKEILPHRPDLRLVLMSATLNAELFSSYFNGAPTMHI
PGFTFPVRAHFLEDILERTRHRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVED
ALEVADFKGYSLHTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSL
KDQLQGHPLLGDPSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDV
VFVVDSGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAF
ADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSKALQPPEPLSVENAVEYLKIIGALDGN
ENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVTPSDKKDLAES
AKAQFAARDYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFLYLL
KDIGLVNDKPETYNAWSHEMHLIRAVICAGLFPGISSVMNKDKSIALKTMEDGQVLLYSS
SVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGY
LEFFMKPELAKTYLSLKMELEELIQKKLLDPKQETQSHSQLLSAVRLLVSEDHCDGRFVF
GRQVLSQVKKETNSKSGVEAENFKNQLQSFLNRAGHDSPTYKTTQLKNSQFRSTVIFNGL
NFVGKPCGSKKLAEKSAAAEALLWLKGDSHSSDGIDHASVLLKKSNKKSRKKSFSGAKWS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcgcgagtgtctgcgcagtgcaacctctctcagcagtgaccaccatgcctatg
gcatattccggcgtatttcagggcttcatcagattcaaaaccatgtcgcggcttcgctgc
actcctctcagaccttatttttcatccatttccaccactcctcttcaccgcaccgccatt
cgcctccgctcctcctccaacgcgcttcaagttgtcaacgtcacgcgcccgaggaccgtc
gcgcgccaggggaccgttacgttgccgttttggcaccagcgaagctccagctacggccgt
tttgcgtaccaggacgtgtccagtgacgattccgatgtcgaatttgcgtcttatccctct
cacagccaacaagtgggggattcaacgctcgagaacattgacgagtggagatggaagctg
accatgcttatgcgctccaaagacgaacaagaagtggtgtccagagagaagaaggaccgt
cgcgatttcgagcagctttccactttagctaccaggatgggtttgtatagccggcaatat
gcaagagttgttgtgtttagcaaggcgcctttgccaaattaccgccctgatttggatgat
aaacgcccgcagagagaggtagtcttaccatttgacgttcataaagaagtagatgctcgt
ctccatgcccatctttcacaaaaggctactgcaagcaagtggagttatttgaatgattca
ttgcataaatcaagtgatgctataagcattccagccaatgaaggaatgcatgaacagcca
gagcccttgactcataatagtgttgtcaaggagaaaatcctgcaacgaagaagtttgcaa
ctgcgtcatcggcaacaagattggcaggagtctcatgaagggcaaaagatgctcgaattt
cgcagaagtcttcccgcgttcaaagagaaggatgcatttttgagacttatttcagagaat
caggtcgttgttgtctcaggtgaaactggttgtggtaagaccacacaacttcctcaatac
atattagaatctgagactgaggctgcccgcggagctgtatgtaacataatttgtactcag
cccagaagaatatctgctatgtctgtttctgaaagagttgcagcagaacgtggggagaag
ttaggagaatctgttggatacaaagttcgcttggagggtttgaaagggagagatacccgt
cttctgttttgcaccactggcgtattattgcggagactgcttgtggataggaatttaaaa
ggtgtaactcatgttattgttgatgaaattcatgaacgtggaatgaatgaagattttctt
ctcattgtcctgaaggaaattctccctcatcgtcctgatttgagattggttttgatgagt
gcaaccttaaatgctgagcttttttcttcatactttaatggtgctccaactatgcatatt
cctggctttacatttccagttcgagcacattttcttgaggatattctggaaagaactaga
catcggttgacaccttataatcaaattgatgactatggtcaagaaaaaacatggaaaatg
cagaaacaagctcaagctttcagaaaaagaaagagccaaattgcttctgctgttgaggat
gctttagaagttgcggactttaagggatatagcctgcacacccaagattcattgtcctgt
tggtgccctgattcaattggttttaaccttattgaacatgtgctttgtcacattgttaag
aatgaaaggccaggagctgttttggtttttatgactggttgggatgatataaactctttg
aaggatcaacttcaaggtcatcctttgttgggtgatccgagccgagtattgcttcttgca
tgccatggctccatggccagctctgagcagaggttgatatttgaaaatcctgaaggaggg
gtgaggaaaattgttttggcaactaacatggctgagactagtattaccatcaatgatgtt
gtctttgtggttgactctggaaaagcaaaagaaacatcatatgacgcattaaataacact
ccttgtttgcttccatcttggatctcaaaagcttcagcccggcagaggagaggaagggcc
ggccgtgttcagcctggtgaatgctaccatctttatcccagatgtgtttatgatgctttt
gctgattatcaattgccagagcttttgagaacacctttgcagtccttgtgcctgcaaatc
aaaactctacaacttggaagcatctctgagtttttatctaaagctctacagccaccggag
cctctatcggttgaaaatgctgttgagtatttgaagattattggggccttagacgggaat
gaaaatttaacagttttagggcacaaattggcaatgcttcctgtagaacccaaacttggc
aagatgctcattttaggaaccatcttcaagtgtttggatcctataatgactgttgttgct
ggtctaagtgtaagagatccatttgtgacgccatctgacaagaaagaccttgcagagtct
gccaaagcccaatttgctgctcgtgactatagtgatcatcttgcacttgtccgggcttat
gagggttggaaagatgctgagacacagcaggctggttatgagtactgttggcgaaatttt
ctttcttctcaaacacttaaggccattgagtctcttagaaagcaattcctttacttgctc
aaagatattggtctggtcaatgacaagcctgaaacctacaatgcatggagtcatgaaatg
catctcatccgagcagtcatctgtgcgggtttgtttcccggaatatcttctgttatgaac
aaagataagtcaatagcactgaagacaatggaggatggtcaggttcttttgtattctagc
tctgtaaatggctgtgtacctcgaattccatacccatggttagtgtttaatgaaaaggtg
aaagtgaattcagtattcctcagagattcaactggtatatctgattcggtgcttctcttg
tttggtgggaatgtatccagaggtggactagatggtcacctgaaaatgttggggggctat
ttggagtttttcatgaaaccagaattagccaagacttacttgagcttaaagatggaactg
gaagaattgatacagaaaaagcttctggatcccaagcaggaaacacaatcgcatagtcag
cttctttcagctgtcagattgttggtttcagaagaccattgtgatggtaggtttgtcttt
ggtcgccaagttctatcacaggtaaagaaggaaacaaactccaaaagtggagtcgaggct
gaaaattttaaaaatcaacttcagtcatttcttaacagggctggacatgactcaccaact
tacaaaacaacgcagctgaaaaacagccaattccgttctactgtcatatttaatgggttg
aattttgttggtaagccttgcggcagcaagaaattagcagaaaaatctgctgctgctgag
gctcttctatggttgaaaggggatagccattcatctgatggtattgaccatgcatcagtt
cttttgaagaagagcaacaagaaaagtaggaagaaatcgtttagtggcgctaagtggagt
tga
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