Vigna unguiculata (cowpea): 114181952
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Entry
114181952 CDS
T06017
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114181952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114181952
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
114181952
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
TPR_14
TPR_19
TPR_15
TPR_9
TPR_2
TPR_16
TPR_11
Motif
Other DBs
NCBI-GeneID:
114181952
NCBI-ProteinID:
XP_027924441
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All DBs
Position
4:10244600..10289768
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AA seq
738 aa
AA seq
DB search
MDKSSGGDKYNIETAEILANEAQHLPVAEATPIYEQLLLLFPTAAKFWRQYVEAYMATNN
DDATKQIFSRCLLHCLQIPLWRCYIRFIRKVNDKKGMEGQEETRKAFDFMLNCVGADIAS
GPVWMEYIAFLKSLPAINGQEESHRMTTVRKVYQKAIVTPTHHIEQLWKDYENFENSVSR
QLAKGLISEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGSYKEEMQWIAWKRLLSFE
KGNPQRIDTASSNKRIIFTYEQCLMYMYHYPDIWYDYATWHATSGSIDAAIKVFQRALKA
LPDSEMLRYACAELEESRGAIQAAKKIYESLLGDGVNATSLSHIQFMRFLRRTEGVEAAR
KYFLDARKSPTCTYHVYVAYATMAFCLDKDPKMAHNVFEAGLKRFMHEPFYILEYADFLI
RMNDDQNIRALFERALSSLPPEESVEVWKKFTQFEQTYGDLASMLKVEQRRKEALSGAED
GTTLESSLQDIVSRYSFMDLWPCSSNDLDHLTRQEWLTKNINKKVEKYILANGTIVTDKT
SMANISTTSPKIVYPDTSKMVIYDPKHTLGAGAGTNAFDEILKATPPALVAFLANLPAVE
GPTPNVDIVLSICLQSDLPTGQSAKTGISTQVQTGKAGIPSQLSAGYAPATSELSGSTKS
HPVPSGVSLKPGSNRQYGKRKESDRQEDDDSTTVQSQPLPRDAFRIRQYQKARASSASQT
GSVSYGSAFSGDLSGSTG
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagcagtggcggagacaagtacaacattgaaaccgcggaaatcttggcaaac
gaggctcagcatttgcctgttgcggaggccacgcccatatacgagcagcttctgctattg
tttccaactgctgccaagttttggaggcaatatgtggaggcatatatggctacaaataat
gatgatgctacaaaacagatttttagtcggtgtttgttgcattgtcttcagattcctcta
tggaggtgctacattcgtttcattagaaaggtcaatgacaagaagggcatggagggtcag
gaagagaccagaaaagcttttgattttatgcttaactgtgttggagcagacatagcatct
ggtcctgtgtggatggagtacatagcctttctaaaatcattgccggctataaatggtcaa
gaagagtcacaccggatgactactgtgaggaaagtctatcagaaggctattgttactcca
actcatcacattgaacaactttggaaggactatgaaaactttgaaaattctgttagtcgt
cagttggctaaaggactaatatctgaatatcaacccaaatataatagtgctagggcagtt
tatcgggagaggaagaagtatgttgatgaaattgattggaatatgcttgctgtaccacca
agtggatcctacaaggaagaaatgcagtggattgcatggaagaggcttttatcttttgaa
aaaggaaatccacagagaatagatactgcctcctccaacaaacgaattatatttacttat
gagcagtgtttgatgtatatgtaccattatcctgacatatggtatgactatgctacatgg
catgcaacaagtggttccatagatgctgcaatcaaagtatttcaaagggctttgaaggct
ctccctgattcagaaatgctgcgatatgcttgtgcagagcttgaggagtctcgtggagca
attcaggctgcaaagaaaatatatgaaagccttttgggagatggtgtcaatgcaacctca
ctttctcatattcagttcatgcgttttcttagaaggactgaaggtgttgaagctgctagg
aagtactttctagatgcacgaaaatccccaacctgtacttatcatgtttatgttgcttat
gctacaatggcattttgtcttgacaaagatccaaagatggctcataatgtttttgaagct
ggactaaagcgctttatgcatgaacctttttatattctcgaatatgctgatttcttgata
cgaatgaatgatgaccaaaatatacgagctttatttgagagggcgttaagttcacttcca
ccagaagagtcagttgaggtctggaaaaagttcacccagtttgagcaaacctatggggat
cttgcgagcatgctgaaggttgagcaaagaaggaaagaagcactttctggagctgaagat
ggaacaacattagagagttccctgcaagacattgtatcacggtacagtttcatggatttg
tggccgtgctcttctaatgatcttgatcatttaactcggcaagagtggcttaccaaaaat
atcaataagaaagtggagaagtatattttggctaatgggacgattgttacagataaaaca
tctatggcaaacatttcaactacatccccaaagatcgtttatcccgatacttcaaagatg
gtgatctatgatccaaagcatacacttggtgcaggtgctggaactaatgcatttgatgaa
attctgaaagctacaccacctgccttggtagcatttttggcaaatctaccagccgttgaa
ggcccaacaccaaatgtggatattgtgctatcaatttgcttgcagagtgatctaccaaca
ggacaaagtgcaaaaacaggaatttcaacacaagtgcaaactgggaaagcggggattcca
tcacagttgtcagcaggttatgctcctgctactagtgaactttctggttcaaccaagtct
caccctgttccaagtggtgtgtctttgaaaccaggaagtaatagacaatatgggaaaagg
aaggaatcagacaggcaagaggatgatgatagtactactgttcaaagtcaaccacttcct
cgtgatgctttccggatacgacagtatcagaaagctcgagccagcagtgcttctcaaacg
ggatcagtttcatatggaagtgcattttctggcgatttatctggcagcactggttga
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