Vigna unguiculata (cowpea): 114182162
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Entry
114182162 CDS
T06017
Name
(RefSeq) uncharacterized protein LOC114182162 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114182162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114182162
03019 Messenger RNA biogenesis [BR:
vun03019
]
114182162
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114182162
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114182162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
114182162
NCBI-ProteinID:
XP_027924757
LinkDB
All DBs
Position
1:35180869..35186936
Genome browser
AA seq
1021 aa
AA seq
DB search
MESTRRTLDRSRELGSKKPRLIDELSARQLPQRQQGSGVVASLVSARARVNDRDSESSES
GRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIADTVCANI
LEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTW
KGVFPPQCLQMIEKELGFTPAVNGSASVSATVRNDLQSQRPPHSIHVNPKYLERQRLQQS
STSKGVVDDMTGALLTSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKS
IDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKR
SLSTREAPKSINLKAQRRPGLTLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVS
SNLSTDSWMTDDENLEGEDHLHIQHPYGVKVDKEISTVKKQLPGFGGHPPSSWQLQKHHT
IDKLNLKPGYSEGFVSTISGLPANASSLPIKKGNQSFTSKAIVGLSKTVEPQFDSGETES
PSGQSPLHRQSPSLPGAVYHPHSMQNLPEQEMPQDLKTSQFLGGPTSQPIRDRSPTLHPV
VQVGNMRRTQEKDMQGTFQPKLQQQQLDSSQAEVFAKTKLPPLSKVSLTKEVSEQSTKNN
LSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVASTSLLDPL
HKDSSSLPKKPQGKAGQPPQRPSTQPPASSNVNAAKSNVNPIANLLSSLVAKGLISAETE
SPTMVPSEVLKGSRDKTVNIITSSSFPVTSVSDSAAVPASSTTRDEEDAATKSSLPSAQS
TSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKSCGIRFKPEEQYKRHLEWHATR
EHGPIKVSRSWYAKSSDWIAGKVDYSSELEFTDSVVVHDKETESSHLETMIRADENQCLC
VLCGELFEDVYCHERNEWMFKGAVYMNCSDYNDEMESRNVGPIIHAKCLSENSMFTNLGN
D
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggagagtacgcgcagaaccttggatagatctagagaactgggttccaagaagcctcga
ttgatcgatgaactcagtgcccgacagttacctcaacgacagcaagggtccggggtagtt
gcttccttggtgtctgcaagggctcgagtaaatgatagggactccgaaagcagcgaatcc
ggtcgcgggggtgggtaccagcctcagccgcagcctcaccatgagcttgtgactcagtat
aagaccgctcttgctgagcttactttcaattcaaagcctataattacgaacttgactatt
atagccggagagaatcagtctgctgccaaggcaattgccgacactgtttgtgctaacatt
ctagaggttccaagtgatcaaaaactgccgtctctttatctcttagacagtattgttaag
aacatcgggcgggattatataaagtattttgctgtcagattacctgaggtattctgcaag
gcttacagacaggttgatcctattgtccattcaagtatgaaacatctttttggaacttgg
aaaggagtctttcctcctcagtgccttcagatgattgagaaggagcttggctttacacct
gcagtcaatggttcagcttcagtatctgctacagtcaggaatgatttgcagtcacaacgc
cctcctcacagtatccatgtgaatccaaagtatttagaaaggcagcgtctccagcagtca
agtacgagtaaaggagttgttgatgacatgactggagctttgttaacctcaaatgaggat
tcagagaggccaaatagagctttgggtgcttctcgaccatggctggatcctaggattaac
atgcttaataatcagcacacacagagagatgcatttaatgattctgttcctgagaagagc
attgatggatcatttggaggcagtcaatatggttctggcatttctagtaatttggtctca
ggggctggaagaactggaactaagctcattgatttagggcaagaaaaaacatggtccaaa
acagatggtggtgatgcagagaccatatctgggcaaaaaaacggtttcagtctcaagcgt
agtctttcaactcgtgaagcaccaaagtccataaatttgaaagcacaacgtcggccaggc
ctaactttaactcagatatggaacaatatgatgtcagataactggaaaaattccgaagag
gaggagttcacgtgggatgagatgaactctggtttgactgatcatggacctaatgtgtcc
agcaatttgagcacagattcatggatgacagatgatgaaaatttggaaggtgaagatcac
ctacatattcaacacccttatggggtaaaggttgataaggaaatatccactgttaagaaa
caactgcctggttttggtggccatccaccttcatcatggcagttgcagaagcatcacaca
attgataagttgaatctgaagccaggttactcagaaggatttgtgtccactattagtggc
ttaccagccaacgcaagttctttacctatcaagaaggggaaccagtcttttacgtcaaag
gcaatagtaggattgtccaaaactgtagagccacaatttgattctggggagaccgaatcc
ccttctgggcagtcacctttgcatcgacagtctccatcactgccaggagcagtataccac
cctcattcaatgcaaaatttgcctgagcaagaaatgccccaggatctcaaaacatctcaa
tttttgggaggtccaactagtcagcccattagagatcgctcacctacccttcatcccgtc
gttcaggttggtaacatgcgaagaacacaggaaaaggacatgcagggcacgtttcaacca
aagcttcagcaacagcagctcgactcttctcaggctgaagtttttgccaaaactaagctg
ccgcccctgtctaaagtttctttaaccaaagaagtttcagaacagtcaaccaagaataat
ttgtcagctgcagctgtgaagagtggaatcattcccaagaaatcaattaccagtaatctg
gatccaaggaagcatctatccaagtctggggttcagcttcctccttctggcaggtcttct
cctgcaacattaatttcttcggggtctgcagtggcatcaacatctttattggatcctctg
cacaaagattcatcttcgctgcccaaaaaacctcaaggaaaggctggacaaccgccacaa
aggccttctactcagccacctgcttcctctaatgtgaatgctgcaaaaagtaatgtaaac
ccaatcgcaaaccttttaagttcattggttgcaaagggtttgatatctgcagaaactgaa
tcaccgactatggtaccaagcgaggtgctgaaaggatccagagataaaactgtaaacatc
attaccagtagctctttcccagttacatcagtttctgattccgcagctgtcccagcatca
tctaccaccagagatgaggaagacgctgctacaaaatcttctcttccctcagctcaatca
actagcacgaaaatcagaaatctcattggctttgattttaaacctaatgtaattcgagaa
ttccatgaaccggtaattagggaattattggatgatttccctcatcattgcaaaagttgc
ggtattaggtttaaaccagaagaacagtataagagacacttggagtggcatgccacaaga
gagcatggtccaattaaagtatccagaagttggtatgcgaagtcaagtgattggattgct
ggcaaggtagactattcatctgagcttgagtttaccgactctgttgttgtacacgacaaa
gaaacagaaagcagtcatttggaaacgatgattcgagcagatgaaaatcagtgtttgtgt
gtattgtgtggcgagctatttgaagatgtatactgtcacgaaaggaacgagtggatgttc
aaaggggccgtttacatgaactgctcggattacaatgatgagatggaaagtagaaatgtg
ggtcccatcattcatgccaaatgcttatcagagaactcaatgttcaccaatttgggtaat
gattaa
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