Vigna unguiculata (cowpea): 114182984
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Entry
114182984 CDS
T06017
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114182984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114182984
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114182984
Spliceosome [BR:
vun03041
]
Complex C
Other components
Step II factors
114182984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_24
SLFN-g3_helicase
nSTAND3
AAA_30
Flavi_DEAD
AAA_16
T2SSE
Sigma54_activ_2
Microtub_bd
TMEM247
ABC_tran
AAA_7
cobW
Motif
Other DBs
NCBI-GeneID:
114182984
NCBI-ProteinID:
XP_027925594
LinkDB
All DBs
Position
5:45660668..45669710
Genome browser
AA seq
1275 aa
AA seq
DB search
MEENGTFSEVVDINQTIMTLEPEKPTSGGLYVPGKDRVVYVPPERKSRLGLDALASAKRG
GSQYDGGFKLPKERMMTSIAASAEDEDKSELSVVEESEQGGIVSRPRHSGRRYRDTTSET
SYAESSVSEDHYGDTNKVRSTEQAVSNVPPSPSGYDREDHRSERRHSRDDSRSGSGRVRH
QNYYERKGGSYSERDSHSRYDRDHGRKRSRYEDSRRTPGRSDWDDGRWEWNETPRRDNVS
SSRRHQPSPSPMFLGASPDARLVSPWLGGNTPHSSFNSSSPWDHVSPSPIPIRASGSSAK
SSLSRHNGRSHQLNFRSETSNSFQDEVADKSELGEEHKYEITESMRLEMEYDADRAWYDR
EEGSTLFEGDSSSLFLGDEASFQKKEADLAKRLVRRDGTKMSLAQSKKLSQLTADNAQWE
DRQLLRSGAVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTS
DMAIISRKGSTLVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAEVGED
GEIDFKEEAKFSQHLKKGEAVSDFAKSKTIAEQRQYLPIFSVREELLQVVRENQVVVVVG
ETGSGKTTQLTQYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF
EDVTGPSTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLNTDVLFGILKKVVAQR
RDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPVEDYVEGAVKQAMTIH
ITSPPGDILIFMTGQDEIEAACYALAERMEQMMSSSNKVVPKLLILPIYSQLPADLQAKI
FQKAEDGARKCIVATNIAETSLTVDGIFYVIDSGYGKMKVYNPRMGMDALQVFPVSRAAA
DQRAGRAGRTGPGTCYRLYTESAYLNEMLSSPVPEIQRTNLGNVVLLLKSLKVENLLDFD
FMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLTGDLLGCLEE
VLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCND
HFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDIVRKAICSAYFHNAARLKGVGEY
VNCRNGMPCHLHPSSALYGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFS
VKESDTSLLEHKKRQKQEKTAMEEEMENLKKVQAEFERERKQKEKEKTAKHQQQISMPGL
RKGSSTFLRPKKFGL
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaatggaactttctctgaagtggttgacataaaccagactatcatgacactg
gaaccagaaaaacctaccagtggtggactctatgttcctggaaaggatagggtggtttac
gtgcctccggagagaaaatcacgattaggacttgatgccctcgccagtgcgaaacgggga
gggtctcagtatgatggggggttcaagttgccaaaggaaagaatgatgacttccattgcg
gcttctgcagaagatgaagataagtctgagttgtctgttgttgaagaaagtgaacagggt
gggattgtcagcagacccagacacagtggtaggagataccgtgacactaccagtgaaaca
tcatacgcagaaagttctgtgagtgaagatcactatggtgatacgaacaaggttcgttca
actgagcaagcagtctcaaatgttcctccatcaccttctggatatgacagggaggatcac
aggagtgagaggaggcattccagggatgattcaagaagtggtagcggaagagtgcgtcat
cagaactactatgaacgtaagggaggatcttattcagaaagggattcacatagtaggtat
gaccgagatcatggtagaaagcgaagcagatatgaagattccaggagaacgcctggcagg
tctgactgggatgatggcaggtgggaatggaatgaaactcctcgaagggacaatgtctct
agttctagacgtcatcaaccttcaccatcaccaatgtttttaggtgcctcaccagatgct
cgattagtttcaccatggttggggggcaacacacctcattcatcttttaattcatcttcc
ccctgggatcatgtttctccatctcctatcccaatacgtgcgtctggatcttcagccaaa
tcttctctttctagacacaatggaagatcgcatcagcttaattttagatcggaaacttca
aattcgtttcaggatgaagtggctgataagtctgaattgggtgaagaacacaagtatgag
attaccgaaagcatgcgtttggagatggaatacgatgctgaccgagcatggtatgacaga
gaggaagggagcacattgtttgaaggtgacagctcatcactttttcttggagacgaagct
tcctttcagaaaaaagaggctgatctggccaagagactggttagaagagatgggaccaag
atgtcccttgcacagagcaagaagttgtcccagctcacagctgataatgctcaatgggag
gataggcaactgctgagatctggagctgttagaggtacagaggttcagaccgaatttgat
gacgaggaagaacacaaagttattctacttgttcatgatacaaagcctcctttccttgat
ggcagagttgtttttactaagcaggctgagccaattatgccaataaaagatccaacatct
gacatggctataatatctcgtaaagggtcaactctggttagagaaatccatgagaagcag
agtatgaacaagtctcgccaacgcttttgggaacttgcaggctcgaaacttggtgatatc
ttgggtgttgagaaaacagcagagcagattgatgcagacactgctgaagtgggggaagat
ggtgaaattgattttaaggaagaagctaagttttcacagcatttgaagaagggagaagct
gtgagtgactttgccaagtcaaaaaccattgcagagcaaagacaatatctgcctattttt
tcagtgagagaagagttattacaggtggttcgcgagaatcaggtggtagttgtggttgga
gaaactggttcaggaaagacaacccaattaacacagtacctgcatgaagatggctatact
ataggtggtatagtgggttgcacccaaccaagacgtgtggcagctatgagtgttgccaag
agagttagtgaagagatggatacagagttgggtgataaagttggctatgctatacgtttt
gaagatgtgaccgggccaagtaccattataaagtacatgactgatggtgtgcttctacga
gaaacactcaaagattctgatctagacaagtatcgggttattgtcatggatgaagcccat
gaaagatcattaaacactgatgtgctttttggaatattgaagaaagttgtagcccaacgc
cgtgatttcaagctgattgtcacatctgcaactctgaatgcacagaaattttcaaatttc
tttggaagtgtaccgatttttcacattcctgggcgaacatttcctgtgaatatattgtgg
agtaaaactccagttgaagattatgttgaaggtgcagtgaagcaggccatgactattcat
ataaccagtcctcctggtgacatccttatcttcatgactgggcaagatgagattgaggca
gcttgctatgcccttgcagaaagaatggagcagatgatgtcatcttcaaataaagttgtt
cctaaactattgattcttcccatatactctcagcttcctgccgacttgcaagctaagata
tttcaaaaagctgaagatggagcccgaaaatgtattgtagccactaatattgccgagaca
tcattaactgttgatggtatcttttatgtgatagactcaggctatggtaaaatgaaggtg
tataaccctaggatgggcatggacgctctccaggtcttccctgttagccgagctgctgct
gaccagcgtgctggtcgagctggtagaactggccctggtacatgctataggttgtatacc
gagagtgcttacttaaatgaaatgctgtctagtcctgttccagagattcagaggactaac
cttggtaatgtggtcttgttgctgaaatctcttaaagttgaaaatttacttgattttgat
ttcatggatccacctccgcaagataatattctcaattctatgtaccagttgtgggttctg
ggtgcccttaacaatgttggggggttaactgatcttgggtggaaaatggttgaatttccg
ctggaccctccacttgccaagatgcttttgacaggtgatctgttagggtgtcttgaggag
gttttgacaattgtgtccatgctttcggtgccctctgttttctttagacccaaggatcgg
gcagaggagagtgatgctgcacgggaaagattttttgtgccagagtctgatcatttaacc
ctgtacaatgtttatcagcaatggaaacagcatgattacagaggtgattggtgtaatgat
catttcttgcatgtcaaaggtctaagaaaggctagagaggtgagatcccagttgcttgac
attctgaagactttaaagatccccttaacctcttgttggcctgatacagacattgttaga
aaagcgatttgttctgcatattttcacaatgcagcaaggttaaagggtgtgggagagtat
gttaactgcaggaatggcatgccttgccatcttcatcctagtagtgctctctatggtatg
ggttgcactcctgagtatgtggtttatcacgagttaatcctgaccacgaaggagtacatg
cagtgtgccacggcagtggagccccagtggctggctgagttgggacccatgtttttctct
gttaaggagtctgatacatcgttactggagcataagaagagacaaaaacaagagaaaaca
gccatggaggaggagatggagaacttgaagaaggtgcaagcggagtttgagagagaaagg
aaacagaaggagaaggaaaagacagctaagcatcagcagcaaatctccatgccaggttta
cgaaagggttcctccacattcttgagaccaaagaagtttggtttgtaa
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integrated database retrieval system
