Vigna unguiculata (cowpea): 114183091
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Entry
114183091 CDS
T06017
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114183091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114183091
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114183091
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114183091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
114183091
NCBI-ProteinID:
XP_027925746
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Position
5:complement(44862675..44871173)
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AA seq
662 aa
AA seq
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MSSLLNSSLNGSASNLPEGAAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGSYNVPN
IPSSLTSRNSTLNSVPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRG
GISVIGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNM
VGAGNIGRISSGGLSVPGLASRINLGGNAGSGGLGVQGQNRLISGVLPQGSPQVISMLGN
SYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDINDFPQLSTHPSSAGGPQGQLG
SLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKGGNADFAMDMYQKEQLHDNAVSMMQSQ
HFSQMGRSSGFSLGGSYPSHRTQQHTPSVSSNGVSFSSVNNQDLLHLHGTDMFPSSHSTY
HSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAANQSFRDQGMKS
MQSAQSSQDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDE
PAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGW
FYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLP
QR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcttacttaattcttctctgaacgggtctgcttcaaatcttccagaaggtgct
gctgggcgttcctttgctacgtcattttctggtcagtctggtgtagcctccccagttttt
catcactctggttctattcagggattgcacaacattcatgggagctataatgtacccaat
atacccagttcacttacatcaagaaactcaacgttaaatagtgttccaactgggggagga
gttcaacaaccttcagcaagcctttcaagtggaagatttgcatcaaataatctacccgtt
gctctgtcacagctatctcatggaagctcccatggacattcaggagtcaacagtagagga
ggtataagtgttataggaaatcctggatttaatagtagcacaaatggagttgctggtcct
attcctgggattcttccaacttctgctgcaattggtaaccgaaatgctgttccaggattg
ggagtatccccaattttgggaaatgcaggtcctcgaatcactagttcgatgggaaacatg
gttggtgcggggaacattgggaggataagctctggaggattgtctgttcctggcctcgct
tctcggataaatttaggtggaaatgctggatctggtggtttaggtgtacaaggacagaat
cgattgataagtggtgttcttccacaaggatctccacaggtaatttcaatgctaggaaat
tcctatcctagtgctggaggtccactttctcaaagtcatgttcaaacagtaaataacttg
aactctatggggatgctgaatgatgtgaattccggtgacagttcaccttttgatatcaat
gacttccctcaactgagcactcatcctagttctgctggtggtcctcaaggacagttgggt
tctttacgaaaacagggtattggagttagtcccattgtccaacaaaaccaagagtttagt
attcaaaaggaagacttcccagctttaccaggattcaaaggtggtaatgcagattttgca
atggatatgtaccagaaagaacaacttcatgataacgccgtgtcaatgatgcaatctcag
catttctctcagatggggcgatcttctggtttcagtttggggggatcatatccatcacat
cgtacacagcagcataccccttcagtcagtagtaatggtgtctccttttcatctgtaaac
aatcaagaccttctccatttgcatggaacagatatgtttccatcttcacactcaacttat
cattcccagaccagtggacctcctggcattggactaaggcctttaaattctccaaatacg
ggtatgggttcatatgaccagcttattcagcagtatcaacagcagcagaaccagtcgcaa
ttccgccttcagcaaatgtcagctgcaaaccagtcttttagggatcagggcatgaagtcc
atgcaaagtgcgcaatctagtcaagatccatttggtgcacttggcttgttcagtgtagtc
catataagtgatcctgacctgaaatatcttgctcatgggattgatctcacaacgcttggg
ctgaatttgaattcatcagaaaatctttacaagacttttcgatcaccatggtctgatgaa
ccggccaagggtgatccagagttcagtgtgctacaatgttattatgctaaacagccgcct
gccctacatcaaggttattttttgaagttttcggtggaaacattgttttacatattttac
agcatgcccaaagatgaagcacaactatatgcagcaaatgaactttacaaacgaggttgg
ttttatcataaagaacaccgtttttggtttataagagttgccaacatggagccgcttgtc
aaaacaaatacatacgagagaggatcttaccattgttttgatccaaatacctttgagaca
gtccggaaggataattttgttcttcattatgaattggtggaaaagagaccgtctttacct
caacgttaa
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