Vigna unguiculata (cowpea): 114184195
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Entry
114184195 CDS
T06017
Name
(RefSeq) uncharacterized protein LOC114184195 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114184195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vun03000
]
114184195
03019 Messenger RNA biogenesis [BR:
vun03019
]
114184195
04121 Ubiquitin system [BR:
vun04121
]
114184195
Enzymes [BR:
vun01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114184195
Transcription factors [BR:
vun03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114184195
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114184195
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114184195
Ubiquitin system [BR:
vun04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114184195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
114184195
NCBI-ProteinID:
XP_027927268
LinkDB
All DBs
Position
5:44640418..44649729
Genome browser
AA seq
1019 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDMAEKDDTEGRCPACRSPY
DKEKIVGMAANCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQQREYFGQYGKVLKVSMSRTAAGVVQQFPNSTCSVYITYSKEEEAIRCIKNVH
GFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRV
QQITGAANNMQRRTGDVLPPPLDDCTDTSSGKPTVNNVTTVSIVKGSPPNGSSGRPISLS
AAAWGTRATNCQPAAGGLLCANGLSRPKPDTINNTLPILSAVEASLNGDVTKRPPSSDGS
HSITVGVKDELLKPDKQYSSMDNNSRAGERTSASDVRFSPMKLNNQLSSLPLPKDGDRGS
CTAMNAPNSIDITGQSCSFGSEEAIISTSEETDNLSCNLSSIYIDRNSANDNYSQPKPIS
SCDNMSAKPIESHESQYNSDKHRDVMITNADTKAAAIDNEVCNVKELCDLSVVSQSQVLS
VNTEVEDDVTTFDNQRLKDPEVVSSYLPKSTSFRHVPNHSHPHLLQHGESCNVVNAGSLD
ANYEVGDDSLLHANNILCNGYSEKSMSSSSYGFLQDERNEQHIGSLFSETVSIGSDAVMD
KGENSIISNILSMEFDAWGDSVTSPQSLAKLLGDKTDKQNGSLKKCSSWKIQSNNQSRFS
FARQEESKIQANVHASSGAIQQYPSKGSLHDFVERDFSLDKLGITNGFPSNNLEESGNLG
SGQFFPSNNKLSAVSRAQISVPPGFSVPNRAPPPGFSSLERTGHAFDSVSGNSLRDPSFL
LRNSYQTPSNGNIGGPGDIEFMDPAILAVGKGRIQGARNSPLLDMRSNYPEQLNYLENEA
RVQLLMQRSLSPQQNLRFSDIGNSFSQFGDSYGISSRLNQSQVSNLAPFPQLSLQQSRNA
VLSNGQLDGWNEVQTGNSLGVAELLRNERLGFNKFYRGYDEPKYRIPNSRDLYNRTFGI
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaaggagaaaggacttgtcctctctgtgcagaagagatggatttgactgat
cagcaattgaaaccatgcaaatgtggttatgagatatgtgtctggtgttggcatcacata
ctggatatggctgagaaggatgacacagagggacgatgccctgcgtgtcgttctccgtat
gataaggaaaagattgttgggatggctgcaaactgtgagagactggtggctgaagttcat
atggaaaaaaagatgaaaaaccagaaagcaaagtctaaatcatctgaagcacggaagcag
ctcagtagtgtgcgagtaattcagcggaaccttgtttacatagtgggcttgcctctcaat
ctggctgatgaagatcttctccagcagcgagaatattttggtcagtatgggaaggtctta
aaagtctcgatgtctcgtacagctgctggtgttgttcagcagtttccaaatagtacatgc
agtgtatatattacttattcaaaggaagaagaagcaattcgatgcattaaaaatgtacat
ggattcgttttggagggtagacctttaagggcttgctttggaaccactaaatattgtcat
gcatggctcagaaacatgccttgcagcaatccggattgtctatatctgcatgagattggc
tctcaagaggatagtttcactaaagatgaaataatttcagcatacactagaagtcgtgtt
caacaaattactggtgctgctaacaacatgcaacgtcgcactggtgatgtgttgccacct
cccttggatgattgcacagatacttcatcagggaaaccaactgtgaacaatgtgaccacg
gttagcattgttaaaggttcacctcctaatgggagttctgggagacctatatctctttct
gctgctgcatggggtacgcgggctacaaattgtcagccagctgctggtggtttattatgt
gcaaatggattgtccaggcctaaacctgatacaatcaacaacacactacccattttgtct
gctgttgaggcttccttaaatggtgatgtgacaaagagaccaccgtcaagtgatgggagt
catagcatcactgtcggggtaaaagatgaattattgaaacctgataaacaatatagtagc
atggataacaattctagagctggtgaaagaacttcagcttctgatgttcgtttttcacct
atgaaattgaacaaccagttgtcttctctaccattacccaaagatggtgatagaggcagt
tgtactgctatgaatgcaccaaattctattgatattactggacaatcatgcagctttggt
tctgaggaagcaattatttctaccagtgaagaaactgataatttgtcttgtaatttgtct
tctatttacattgatagaaactccgcaaatgataactacagtcaacccaaacctatcagc
tcatgtgataacatgtcggctaaaccaattgaatctcatgaatcacagtataattctgac
aaacatagagatgtcatgattacaaatgcagacactaaagctgctgcaatagataatgag
gtttgtaatgtaaaggaattatgtgatttgtcagtggtttctcaatctcaagtactatca
gttaatactgaagtggaagatgacgtaacaacttttgataatcaaagacttaaggatcca
gaagttgtttcttcatatttgccaaaatcaaccagttttcgtcatgtcccaaatcattct
catccacatctcctgcagcatggtgaatcatgcaatgttgtaaatgctggttctttagat
gccaattatgaagttggggatgactcactattacatgcaaataacatattatgcaacgga
tattctgagaaatcaatgagctctagttcttatggtttcctccaagatgaaaggaatgaa
caacatattggaagtttattcagtgaaacggttagtatcggaagtgatgctgtcatggac
aagggtgagaatagtataatttcaaatattttgtccatggagtttgacgcctggggtgac
tcggtaacatcacctcaaagtttggccaagttgttgggtgacaaaacggacaagcagaat
ggctcactaaaaaaatgtagttcttggaaaattcaaagtaacaatcagtccagattttct
tttgcaagacaggaggaatccaaaatccaagccaatgtacatgcatcttctggtgccatt
caacaatatccaagcaagggctcactacatgatttcgtggaaagagacttttctttggac
aagctaggtatcacaaatggcttcccctccaataacctcgaagaatctggaaatcttggc
agtggtcaattttttccttcaaacaataagctttctgctgtttcaagagcacaaatttct
gtaccaccaggattttctgtaccaaacagggcaccacctcctggtttctcttctcttgag
agaacggggcacgcttttgactctgtttctgggaattcgttgcgtgacccttctttctta
ctgcgaaattcatatcaaacaccctcaaatggaaatatcggtggtccaggagacattgaa
tttatggatcctgctattttggcagttggtaaagggagaattcaaggtgcacgaaatagc
ccattgctggacatgcggtccaattaccccgaacagttaaattatttggaaaatgaggct
agagttcaattattgatgcaaagatctctatcaccacagcaaaaccttcgattttctgat
attgggaattccttttctcagtttggtgattcctatggcatctcttctaggttaaatcaa
tcacaagtcagtaatctggctccatttcctcagttgtctcttcagcagtctagaaatgca
gtcttgtcaaatggtcaattggatggatggaacgaagtgcagaccggaaatagtttgggt
gtggccgagcttttaagaaatgaaagacttggatttaacaagttttatagaggatacgat
gaaccaaaatatcggatacctaattctagggatctgtacaacagaacatttgggatttga
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