Vigna unguiculata (cowpea): 114184425
Help
Entry
114184425 CDS
T06017
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114184425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114184425
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114184425
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114184425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
114184425
NCBI-ProteinID:
XP_027927539
LinkDB
All DBs
Position
1:24202340..24215289
Genome browser
AA seq
890 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVET
LEDLVTIPTGLSKVAPSLGVKNSSAVSTSQSASASASQTSEQADDTASQDSNSDNVAKTP
PPKSGGIGSTASTPTGNHTSPISVNVSSHTLSSPPAVAAIPSSNSVRNVLESSNVTNSSS
VNQSTSTKEEDINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSANIVPSNGALGS
VPSASEIAKRNMLAADDRLGSSAMVQPLVSPLSNRLILPQAAKANDGTVSVDSGAVNDAA
AAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHGT
LLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSASLQQP
PNSVHSPSSQQSLMPGVSKDSDGGNSKGEEQQQHQNFTDEPTTESTASTAIGKNLINEDD
SKSAYAVDSPVGVSASLSESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAEHGAIGD
SFSASSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPPSYPQVQSPI
VNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEE
PKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagctccagggagagatagatcgtgttctcaagaaggttcaggaa
ggtgttgaagtcttcgatagcatctggaacaaggtttacgacacggacaatgctaaccag
aaggagaaatttgaagcagacctcaagaaggagattaagaagctacagagatatagagac
caaatcaagacatggattcagtccagtgagatcaaggacaagaaggttagtgcctcgtat
gagcaagctttggtggatgcgcgtaagctaattgaacgagaaatggaaagatttaagata
tgtgagaaggaaacaaagaccaaagcgttttctaaagaaggcttaggtcagcagcccaag
actgatccgaaagagaaggctaaatcagagacaagggactggttaaacaatgtggttgga
gagttagaatcacagattgataactttgaagcagagcttgaagggctttctgttaagaaa
ggaaagaacaggccacccagattgacacatctagagacatcaattactcggcacaaggct
catataaaaaaatgtgaattcattttgaggctactagataatgatgaattaagtcctgag
caagttaatgatgttaaagatttcttggatgactatgttgagcgtaatcaggaggatttt
gatgagtttagtgatgtcgatgaactgtacagttcattacctttagacaaggtggagacc
ctagaagatcttgttacaattcccactggtctttctaaggtggcacctagtcttggcgtg
aaaaattcttcagcagtctcaacatcacaatcagcatcagcatctgcatcacaaacatct
gagcaagctgacgacacagcatcccaggatagcaattctgacaatgttgccaaaacacca
cctcctaaaagtggtggaattggttctactgcttcaactcctactggcaaccacacttct
ccgatttctgtgaatgtttctagtcatacactgtctagtccacctgctgttgcagccata
cctagttcaaattccgtgcggaatgtcttggagagtagtaatgttaccaattcatcttct
gtaaatcagtctacgtctacaaaggaagaagacattaatagcttccctagcaggagaccg
tctccatcactttctgatgcgacactcttgaggggaagaaactctctatcaaatcaagca
acagccagcatccctcttggttctgcaaacatagtccctagcaatggggccctgggatca
gtcccttcagcttctgaaatagctaaaaggaacatgttggcagctgatgatagacttgga
agtagtgcgatggtgcagcctcttgtatccccgctaagtaatagattgatcttgcctcag
gcagcaaaggctaatgatggaactgtttcagtagactctggtgctgttaatgatgctgct
gcagctgtatctgggagagttttctccccttctgtggttcctggcatgcaatggagacca
ggaagtccctttcagaatcagaatgatgcgggccagcttcgtggaagaactgaaatagct
cctgatcaaagggaaaagtttttacagaagtatcagcaagtgcaacaagggcacggtacc
cttcttaatatgccttctcttgttgggggaaaccataagcagttttctgcccagcaacaa
aacccccttttgcaacagtttaactctcatggctcatctgtttcttctcaatctggtatt
ggacttggggtccagtccactagtctcagtggtatttcttctgcatcactacagcagcca
cccaattctgtccattccccctctagtcaacagtcactgatgccaggtgtttctaaagat
tcagacggtggcaattctaagggtgaagaacagcagcaacatcagaactttactgatgag
ccaacaactgaatctactgctagcactgcgattggcaagaatctcataaatgaagatgat
tcaaaatcagcatatgctgtagattcgcctgtaggagtgtctgcctctctttcagaatct
gctcaaacttccagagatattgatttgtctccgggccaaccattacaatccaatcaacct
actggcaaccttggtgtcattggtagaagaaatggtgctgaacatggagcaattggtgat
agttttagtgcatccagtgttagttctggtggagtgcgtgatcagttgtataatttgcaa
atgcttgaggcagcccacttcaaaattcccctacccaaagactctgaacgtcccaggact
tatacgcctaagcatccgacaattacacctccaagttatcctcaagtacagtcacctatt
gttaataatcctgccttttgggagagagtgggtctggaaccatttggcactgatactcta
ttctttgcattttattaccaacagaatacttaccaacaatatttggctgcaaaggagtta
aagaagcagtcttggagataccacagaaagtataacacttggtttcagcggcatgaagag
cccaaagttgccactgatgaatatgagcagggaacttatgtgtactttgatttccatatt
gcaaatgatgacatgcaacatggatggtgtcaaagaattaagactgaattcacttttgag
tacaattatcttgaagatgatctccttgtataa
DBGET
integrated database retrieval system
