Vigna unguiculata (cowpea): 114185045
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Entry
114185045 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114185045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114185045
03036 Chromosome and associated proteins [BR:
vun03036
]
114185045
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114185045
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114185045
mRNA degradation factors
5'-3' decay
Decapping complex
114185045
Chromosome and associated proteins [BR:
vun03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114185045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Mdt30
EPL1
Motif
Other DBs
NCBI-GeneID:
114185045
NCBI-ProteinID:
XP_027928340
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All DBs
Position
5:5959368..5965420
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AA seq
512 aa
AA seq
DB search
MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHQHHQQQQ
QQHHQHHQHQQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDSSSQDWKARLNI
PAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILA
RAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVT
TGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPS
IEQLIQFLPGTRQILMFSATFPVTVRDFKDRYLRKPYVINLMDELTLKGITQYYAFVEER
QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD
FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT
YEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatagagatagagagaggtacccacctgggatggggttaggaagagggttgaac
tcgaaccctgggtttcaaccgagaccacatcagcaacatcaatatgtgcagaggcacatg
gtgcagcaccatcatccgcaacagtatcaacagaaccaccagcaccaccagcagcagcaa
caacagcatcatcaacaccatcaacatcagcagcagcaacaacaacaacagcaacagtgg
ttgagaaggaaccagttaggtggtgggaccgacaccaacgttgtggaggaggttgagaag
actgtacagtctgaagccgttgactcaagttcacaagattggaaggcaagactaaatatc
cctgcacctgatacacgctacaagacagaggatgtgacagcaactaaaggcaatgaattt
gaggattactttttgaagcgtgagctgcttatgggaatatacgagaagggttttgagaga
ccatctcctatccaagaagaaagcattccaattgctcttactggtagtgacattcttgct
agggctaaaaatggaactggcaaaactgctgcattttgtattcctgcattggaaaaaatt
gatcaggataataatgttattcaagttgtaatattggtcccaactcgagagctggctttg
caaacatcccaagtgtgtaaagaacttggaaaacatttgaaaattcaagttatggttaca
acaggtggtaccagcctgaaagatgatattatgcgtttatatcaaccagttcatctgcta
gttggaactccaggaagaatattagatcttgcaaagaagggtgtttgcattctgaaggat
tgctctatgcttgttatggatgaggctgataagcttctctccccagagttccaaccttcc
atagaacagctgattcaatttcttcctggaacccgtcaaattctgatgttttctgctacg
tttcctgttactgttagggacttcaaagatagatatctacgtaagccatatgttattaac
cttatggatgagctaactctgaaaggtattacacaatattatgcatttgtggaagagagg
cagaaagtccactgcctaaatactcttttctctaagcttcaaataaaccagtcaatcatt
ttctgcaattccgtgaatcgggttgaacttcttgccaagaaaatcactgaacttgggtat
tcgtgtttctatatccatgcaaagatgttgcaagaccaccgtaatagagtatttcatgac
ttccgcaatggtgcctgcagaaatcttgtttgtactgatctcttcactaggggaatagac
atccaagcagtgaatgttgttattaattttgattttcccaaaaactcagaaacctaccta
cacagggttggtcgttcagggaggtttgggcacctaggtttagcggtgaacttgatcacc
tatgaggatcgcttcaatttatatagaattgaacaagaacttggcactgaaataaaacaa
attccgccacacattgatcaagcaatatattgccggtga
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