Vigna unguiculata (cowpea): 114185316
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Entry
114185316 CDS
T06017
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114185316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114185316
03009 Ribosome biogenesis [BR:
vun03009
]
114185316
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114185316
Spliceosome [BR:
vun03041
]
Complex A
U2 snRNP components
U2 related factors
114185316
Complex B
114185316
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114185316
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
90S particles
Helicases
114185316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
FtsK_SpoIIIE
AAA_30
AAA_7
Flavi_DEAD
AAA_33
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
114185316
NCBI-ProteinID:
XP_027928780
LinkDB
All DBs
Position
1:37555798..37560375
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDESVAKIAKTNGGANNSVANALINRWNARPYSQRYFEILEKRKTL
PVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY
KVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGXPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKEISN
LGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPGRKIVISTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNL
TKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQXVRIMARFNLKL
CSTDFNSRDYYVNIRKAMLAGYFMQXAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKDKEETR
SRR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaggtgagcttgttcgacgtggtagatgaatctgtagcg
aagatagcgaaaacaaatggcggcgccaataacagcgttgccaatgctctcatcaatcgc
tggaacgcaaggccttactctcaaaggtacttcgagattttggagaagagaaaaaccctc
cccgtttggcaccagaaagaagagttcttacaagttctcaaagataaccagactttgatt
cttgtcggtgaaactggtagtggcaaaaccactcagattcctcagtttgttttggacgct
gtcgagttagagactccagacaaacgtaggaagatgatgattgcgtgcactcagcctcgg
agagtggctgcgatgtctgtttcgcgtcgtgtggctgaagagatggatgtaaccatcggg
gaagaggttggttacagtatcagatttgaagactgcagtagtgcgaggacagttttgaag
tatctcacagatggtatgcttttgagagaagcgatgacggatccacttttggaacgatac
aaagtaattattcttgatgaggcacatgagaggactttggctaccgatgtgctgtttggt
cttcttaaggaagtgcttagaaatagacctgacctgaagttggttgttatgagtgcaact
cttgaagctgaaaagttccagggctactttaatgggnccccacttatgaaggttcctgga
agactacatccggtggaaatcttctatactcaggagccagagcgggattacttggaggct
gctattaggactgtggtgcagatacacatgtgtgaacctccgggagatatacttgttttt
ctcacaggagaggaagagattgaggatgcgtgccgcaaaatatcaaaagaaatatcaaat
ttgggagaccaggtgggtcctgtgaaagcagttcccttgtattctacccttcctcctgct
atgcaacagaagatttttgagccagctccacctccactaaaggagggagggcctggaagg
aagattgtgatatcaacaaatatagcagaaacttcgttgacaattgatggtatagtctat
gttattgaccctggatttgctaagcagaaggtttacaacccacgggtccgtgtcgagtct
ttgttggtgtctccaatatcaaaggctagtgctcatcagagatctgggcgtgctggaaga
actcagccagggaaatgttttcgactttatactgaaagaagtttcaataatgatcttcag
ccacagacctaccctgaaatcttgagatctaatctagccaacactgttcttaccttaaag
aaacttggtatagacgatttagtgcattttgatttcatggaccctcctgccccagagacc
ttgatgcgagcactggaagtgttgaattacttgggtgctctggatgatgatggaaactta
actaagctgggtgagattatgagtgaatttccactggaccctcagatgtcgaagatgctc
gttgttagtcctgaattcaactgttcaaatgagattctttctgtttctgccatgctatca
gtacccaattgctttgtccggcctagggaggcacagaaagctgcggatgaagcaaaagct
aggtttggacacattgatggagatcacctcacgctcttgaatgtataccatgcgtacaag
caaaataatgaggacccttcttggtgctacgataacttcgttaatcacagggcgttgaaa
gcagcagataatgttagacaacagntagtgcgaatcatggctcggtttaacctgaagtta
tgcagcactgattttaatagccgtgattactatgtcaacataagaaaggcaatgctagct
ggctatttcatgcagngtgctcatctggaacggacaggacattacctgacggtgaaagac
aaccaggtggtgcacttgcatccatcaaattgcctggaccacaaaccggagtgggtaatt
tataatgaatatgttcttactagtcggaattttattcgtacagttacagacatacgaggg
gaatggttggttgatatagcaccacattactatgatttgtctaatttcccccaatgtgag
gcaaagcgtgttctagagaaactttacaagaagcgagaaaaggataaggaggaaactcgg
agtcgcagataa
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