Vigna unguiculata (cowpea): 114186230
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Entry
114186230 CDS
T06017
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03440
Homologous recombination
vun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114186230
03450 Non-homologous end-joining
114186230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vun03032
]
114186230
03400 DNA repair and recombination proteins [BR:
vun03400
]
114186230
DNA replication proteins [BR:
vun03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
114186230
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
114186230
BRCA1-C complex
114186230
NHEJ (non-homologous end-joining)
MRX complex
114186230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_29
TPR_MLP1_2
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
114186230
NCBI-ProteinID:
XP_027930073
LinkDB
All DBs
Position
1:complement(41864752..41874347)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAHDQEKTESVKC
QVLQLEDSIKQLEDKIHHAEETLKDLRKLQEQISTKTAQRSTLLKEQEKQHAALVEENED
SDELLLEWKTKFDERIAILEAKIRKLKRESDDATEKGTALTNNIGHTIKEIAKLQAEAEA
HMSLKNERDSSIQDLFTTYSLGSLPTSPFSDEVALNLSRRVKSRLADLEKDLDEKKKAND
NELEMAWDCYMDANDRWKDIEAKIKAMQGIKDGILKRIEEKKNELDSSEHQMTNVNLSHI
DERERHLKKEIEKKESQLSQRQFESIIPQMQNEIFSVDQKIRAVNSEKDIMTADSADRVM
LSHKKAELENRKKKHKKMFDDLKDKIRKVLKGRVPLDKDVKKEITQALRAVGAEFDDMNA
KYRDAEKEVNMLQIKIQEVNGNLSKHRKDLESRKRFIDSKLQSLDQQCSGLDSYLKVLES
SKEKRDVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSPEEEDNFVKKQRVKAAS
SAEHMKVLAVESSNAESHFQQLDKLRMVYEEYVKLGKETIPNTEKELQQLKDEMDDKSQA
LDDVLGVLAQVKTDKDLVDTLVQPVENADRLFEEIQDLQKQVEDLEDKLDFRGQGVKSLE
EIQLELKTLQSTKDNLQSELERLRDEQIHMEKDLSHICNRRHNLTEEKLKATNLLQGVKR
LEEELERLTEEKTQVDLDEKHLADALGPFSVEKDRLLANYNDMKIRLNLEYEDLAEQKRS
YKQEAESLFRMNSKIKEYSDLKKGDRLKELQEKNSRSQTELESCDTRKKEISAELVKSKD
LMQNQDQLRRKIDDNLNYRKTKAEVDELAHEIETLEENILKAGGISTIETERQKLSQERE
RLLSEVNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALV
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDLQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgttgataaaatgctgatcaagggcatccggagtttcgacccggagaacaag
aacgtcatcaccttcttcaagcccttaaccctaatcgttggtcccaacggtgccggcaag
accaccatcatcgagtgtttgaagctttcttgcaccggcgagttgcctcctaatgccagg
tctggccacagtttcatccacgaccccaaggtcgccggggaaaccgaaaccaagggacag
attaagctccgattcaagacggccgccggcaaagacgtggtctgcgtcaggtcctttcag
cttacgcaaaaggcctctaaaatggaatacaaggctattgagagtgtgcttcagaccatt
aatcctcacacgggagagaaagtttgcctcagctatcgatgcgctgacatggatagagag
attcctgcgctcatgggtgtttccaaggccattctcgaaaacgttatattcgttcaccaa
gatgaagccaactggcccctacaggatccttccaccttaaagaagaagtttgacgacatc
ttttccgcaactcgatacaccaaggcattggaagttataaagaaacttcacaaggagcag
gctcaagagataaagacttacaagctcaaactggaacatcttcaaactctcaaagatgct
gcttataagctaagggaaagcattgcacacgatcaagagaaaacagagtctgtaaagtgt
caagtactgcagttggaagatagcattaaacaattggaggataaaattcatcatgcagag
gaaacgttgaaagatttgcgaaaactgcaagagcagatatcaactaaaactgctcagcga
agcaccctgcttaaggaacaagagaagcaacatgctgcacttgttgaggagaatgaagat
tctgatgagttattgttggaatggaagaccaagtttgatgaaaggattgcaattttagaa
gcaaagataagaaagttgaaaagagaatcggatgatgctaccgagaaaggtactgccctc
acgaataacattggtcataccatcaaagagattgccaaactacaagctgaagcagaagct
cacatgtctttgaagaatgagcgtgattcctccattcaagatctttttactacatatagt
ttagggtctcttccaacttctcctttcagtgatgaggttgctttaaatctctctaggcgt
gtaaaatcaaggttggcagatcttgagaaagatcttgatgagaaaaagaaagcaaatgac
aacgaacttgagatggcatgggattgctacatggatgctaatgaccgttggaaagatatt
gaggctaaaataaaggccatgcaagggatcaaggatggcattctgaagcgcattgaagag
aagaaaaacgagctcgattcatctgaacatcaaatgactaatgtgaacttatctcacata
gatgaaagagaaagacatttgaaaaaggagattgagaagaaggaaagtcaactatctcaa
agacaatttgaatccattatacctcaaatgcaaaatgagatatttagtgtagatcaaaag
attagggctgtcaattcagagaaggatatcatgactgctgattcagcggacagagttatg
ctatctcataagaaagcagagttggaaaatcggaaaaagaaacataagaaaatgtttgat
gacctaaaggacaaaattagaaaggtgctgaaagggagggttcctcttgataaggatgtg
aaaaaggaaattactcaagcattaagggctgttggagcggaatttgatgatatgaatgca
aagtaccgcgatgctgagaaggaagtcaatatgttgcaaataaaaatacaagaagttaat
ggtaacctatccaaacaccgcaaggatttggaatcaagaaagagatttattgattcgaag
cttcagtctttggatcagcaatgttctggacttgattcttatctcaaagttttagagtct
tccaaggaaaaaagagatgtacagagaagcaaatataatattgctgatggtatgaggcag
atgtttgatccttttgaaagggttgccagagctcatcatgtttgcccttgctgtgagcgg
cccttctctccagaagaagaagacaattttgtcaagaagcaaagagtgaaggcagctagt
tcagctgaacatatgaaagttctcgctgtggaatcctcaaatgcagagtctcattttcag
cagctggacaagcttaggatggtttacgaagaatatgttaaacttggcaaggagaccatc
cctaatactgaaaaggaacttcagcaacttaaagatgagatggatgacaaatctcaggct
cttgatgatgttttaggtgttttagcacaagtgaaaactgacaaggatttagttgacaca
ttggtgcaacctgttgaaaatgctgatcggcttttcgaagaaattcaagatttgcaaaag
caagttgaggatttagaagataagcttgattttcgtggacagggagtgaagtctctggaa
gagattcaactggagcttaaaaccctgcagagcaccaaggacaatttgcaatctgaattg
gagaggttgagggatgaacaaatacatatggagaaggatctatcacatatttgtaaccgg
cggcacaatctaacggaggagaaattgaaagcaaccaacttattgcaaggtgttaagaga
ttagaagaagaattggaacgtttgactgaagaaaagactcaagttgatcttgatgagaag
catttggcagatgctctcggacctttttccgttgagaaagatagattactggctaactat
aatgatatgaaaattagactcaaccttgagtacgaggacctggctgagcaaaagagaagt
tacaagcaagaagctgaatcacttttcagaatgaattctaagatcaaagagtattccgat
ttaaagaaaggagataggttgaaggaactgcaggaaaagaattctcgatcacaaactgaa
cttgaaagttgtgataccaggaagaaggaaatttcagctgagttagtcaaaagtaaagat
ttgatgcaaaatcaagatcagttaagaagaaaaattgatgacaacttaaattataggaaa
actaaggctgaagtggatgagctagcacatgaaattgaaacactagaagaaaatatatta
aaggctggtgggatctctaccattgaaactgaacgccagaaactatcacaggagagggag
agacttctttcagaggtaaaccggtgccgtggaacaatgtctgtttaccaaagcaatatt
tccaaaaataaggttgatcttaagcaggctcaatataaggacatagataagcgatacttc
gaccagcttatccagcttaagacaactgaaatggccaacaaggatctggacagatactac
aatgcacttgataaggcactgatgcgcttccacacaatgaaaatggaagagatcaacaaa
attattagggagttgtggcagcaaacctatagagggcaagacatagactacatcagtatt
cattcagactccgaaggtgcagggacccgttcctacagttacaaggttcttatgcagact
ggtgatgcagagttggagatgagaggaagatgtagtgctggtcagaaggttctggcatct
cttatcatacgtttggcactggctgaaacgttttgtctcaattgtggaatacttgcgctg
gatgaacctaccacaaatttggatggaccaaatgctgaaagtctggctgcagctcttgta
aggatcatggaggacaggaaagggcaggaaaattttcagctaattgtaatcactcatgat
gagcgttttgctcaactgattggtcagcgccagcatgcagagagatattatcgtgtcgcc
aaagatgatcttcagcacagtataatcgaaagtcaggagatatttgactga
DBGET
integrated database retrieval system
