Vigna unguiculata (cowpea): 114187076
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Entry
114187076 CDS
T06017
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114187076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114187076
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114187076
Spliceosome [BR:
vun03041
]
Complex C
Other components
Step II factors
114187076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_16
ABC_tran
Cas3-like_C_2
nSTAND3
AAA_30
Sigma54_activ_2
TsaE
GIPC1_GH2
PhoH
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
114187076
NCBI-ProteinID:
XP_027931004
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All DBs
Position
1:complement(41641789..41644981)
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AA seq
920 aa
AA seq
DB search
MAANDGFGTLQYLSLLSKVCAELESHTGAADKVLAEFIIHLARSSDNLHHFNAVLNDNGA
HFPDYLVRTFFTLVRAVLEPAKTESKAKEKDSGSSSLKPLKRISSPEKGEAKQFTAAGKL
SSPDKDEDGDGLPRQEEDDDDEDFEIELNDDAPAFLQGQTKHSMDMSPHKIFKNPEGSLL
RSAALQSALAKERREVREQHHSSMFDSIPKDLNRAWEDPMPDKGERHLAHELRGVGLSAL
DMPEWKGSSGKTVSFGPKSKLSIPEQKQSLPIYRLKNELVQAVHDNQVLVVIGETGSGKT
TQITQYLAEAGYTTQGKIGCTQPRRAAAVSVAKRVAEEFGCRLGEEVGYAIRFEDCTGSD
TLIKYMTDGMLLREMLMDETLSRYSVIMLDEAHERTVYTDVLFGLLKLLLKRRPELRLIV
TSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYAKQPESDYLDASLLTVLQIHLTEPEGD
ILLFLTGQEEIDFACQSLVERMKGLGKNVPELIILPVYSALPSEMQYRIFEPAPPGKRKV
VVATNIAEASLTIDGICYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG
PGRCYRLYTESAYRNEMPPTTVPEIQRINLTTTTLNMKAMGITDLLSFDFMDSPSPQALV
SAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG
NIFYRPREKQGQADQKRAKFFQPEGDHLTLLAVYESWKAKNFSGPWCSENFVQSRSLRRV
QDVRKQLLTIMERYKLDVASAGNNFTKVTKAITAGFFFRAARKDPQEGYRTLVENQSVYI
HPSSALFHRQPDWVIYHELVMTTKEYMREVTAIDPKWLVELAPTFFKAADPTKMSNRKRQ
ERIQPLYGVSEQWRLSKRRA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaacgatggattcggcacgcttcaatacttgtcgctcctctctaaggtctgc
gccgagttggagtcccacaccggcgccgccgacaaggtcctcgccgagttcatcatccac
ttggctcgttcatccgacaaccttcaccacttcaacgccgtactcaacgacaacggtgcc
cattttcctgattaccttgtccgaacgtttttcacccttgttcgcgcagttcttgaaccc
gctaagacagagtccaaagccaaagaaaaggacagtggcagttcttcgttgaaacctctc
aagagaatctcctctccggaaaaaggggaagcaaaacagttcaccgccgccggaaaattg
agttctcccgataaggacgaagacggagatggattgccacgccaagaagaagatgatgat
gatgaagattttgagattgagttgaatgatgatgcacccgcgttcttgcaggggcaaacc
aaacactcaatggacatgtctcctcacaagattttcaagaatccagaaggttctctgctc
cgcagcgcggcgcttcagtctgcacttgccaaagaacgaagggaagtgcgagaacaacat
catagttcaatgtttgattcaattccaaaagatctcaatcgcgcttgggaagaccctatg
ccagacaaaggtgaaagacaccttgctcacgagcttaggggtgttggtttatctgcattg
gacatgccggagtggaaggggagcagcggaaaaaccgtttcctttgggccaaaatcaaag
ctttctattccagagcagaagcagagtttgccaatttatagattgaaaaatgaattggtt
caggctgtgcatgataatcaggtgttggtggtgatcggagaaactggttctgggaagact
actcagattacccagtatcttgctgaagcgggatacaccacacaggggaaaattggatgt
actcaaccacggagagcggctgcagtgtctgttgcaaagcgggttgcggaagagttcggt
tgtcgattgggggaggaagttggttatgccattcggtttgaggattgcactggatcggat
actctcatcaagtacatgacagatggtatgcttcttagggaaatgttgatggatgagact
ctgtcacggtattctgttatcatgcttgatgaggcccatgaaagaactgtttatactgat
gttctttttggactgctgaagctgctcctgaagcgtaggcctgaattgagattgatcgtc
acgtctgctactctggacgccgagaagttttcagggtatttctttaactgtaacatcttt
acaatacctggtagaacttttcctgtggagatactttatgctaaacagcctgagagtgat
tacttagatgcatctttactcactgttctgcagatccacttgacagaacctgaaggagac
attcttctcttcttaactggtcaagaagagattgattttgcttgccaatctcttgttgag
agaatgaagggattaggtaagaatgttccagagctcatcattttaccggtttatagtgct
cttcctagtgaaatgcagtacaggatatttgaacctgctccacctgggaaaaggaaagtg
gttgtggccactaacattgctgaggcttctttgactattgacgggatatgttatgtaatt
gatcctggatttgccaagcagaatgtttataacccgaagcaaggtcttgactctttggtg
ataactccaatttcacaagcatcagccaaacaaagagcaggacgtgcagggcgtaccgga
cctgggaggtgttatcgtctctatactgagagtgcatacaggaatgagatgcctcccact
acagttccggagattcaaaggataaatcttacaacaactactcttaatatgaaagccatg
gggataaccgatctattgtcctttgattttatggattcaccttcacctcaggcgcttgtt
tctgctatggagcagctttacagtctcggagcattggatgaagagggcctgttaaccaaa
ctggggaggaagatggcagaatttcctttggatccaccgttgtccaagatgctacttgcc
agtgtggatcttgggtgcagtgatgagattttgaccataattgccatgatccaaaccgga
aatattttttacaggccaagggaaaagcaaggccaagcagatcagaagagggcaaagttt
ttccagccagagggagaccatcttactctacttgctgtttatgagtcctggaaagctaag
aacttttcagggccgtggtgttctgagaactttgttcaatctcgatcgttgagaagagtc
caggatgtcaggaaacagcttctcactatcatggagaggtacaaattagatgttgcgagt
gctggaaataacttcaccaaagtgacgaaggccatcactgcaggattctttttccgtgct
gctagaaaggaccctcaggaaggttacagaaccctggttgagaaccagtctgtatatatc
catccaagctcagctttgttccacagacagccagactgggttatctatcatgagcttgtg
atgacaacgaaggaatatatgcgtgaggtcactgccatagaccctaaatggttagttgaa
ttggctccaacatttttcaaagctgcagatcccacaaagatgagcaaccgaaagcgtcag
gaacgtatacaaccactttatggtgtctctgaacagtggcgtttgagtaaacgccgtgca
tga
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