Vigna unguiculata (cowpea): 114187748
Help
Entry
114187748 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114187748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114187748
03012 Translation factors [BR:
vun03012
]
114187748
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114187748
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114187748
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114187748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_3
DEAD
HA2_C
Helicase_C
HA2_N
nSTAND3
OB_NTP_bind
Ank_2
Ank_5
ATPase
AAA_19
ANK_LRRK2
AAA_22
ABC_tran
AAA_7
Motif
Other DBs
NCBI-GeneID:
114187748
NCBI-ProteinID:
XP_027931902
LinkDB
All DBs
Position
6:13765912..13782333
Genome browser
AA seq
1637 aa
AA seq
DB search
MTNTDEAEAEPSCQIAITESFIDEHSEVLWEKYLKILKEFIASNDEVYTFHGNLSGEERK
AVDQLCHLMELGVRFCGTAGEQKVIAFKVNNEASNHIQAVLSRKRKNREDPSLCGENAEF
GELNKIWISQTLEKFAASNDEVYTFENKLTGQEDDLVYNFCRERGFIYTLSRNGIKRRVC
VRKTGEEVDSTTLVENLPYVTCSDESDQIDKLKQSEKEVEPEPESAQHQNFIVIVPKRVR
ISKILKDFLASEDEVYNFEDELSTSDRDLVRHFSRKMGLSCNISGKKTSVHKTKKEVATT
RVSGCHPHITFPEQSTPNRKETVASGQQNPIIDESTRIQIYQTSEKFSASKVNNFEANLS
SEKCVAVHQLSQENSGSGMRQKASVHETEKNIHTTAKLENLPCFTFSGQSKRVLANLLKQ
YPPGDEELWRAMIEAYGDTTDRTEEKEDDVFRRPCMSKVEITKRLEIPSKGTKDSFKLKL
INEKRSKLPITFFKDIITSAVESHQVVIICGETGCGKTTQVPQYILDHMWGKGEVCKIVS
TQLQSLSAISVSKRISSERGEVIGNNVGYKVQFESEGGRHSSIVLCTPGVLLKALASTGS
HFSERQHVKGDVSSITHIIMDEIDERDSYSDLMLAILREILPSNPHLRLILMSGSFDATR
FSQYFGVCPIIYVPRLTYPVKNYYLEDVLSIVKSGGDNHELSQVEKLSLDEAIHLAWSND
DWCSLLELVYRKAKPKVFDYQHSLTGLNALMVFAGKGKVDDMCMLLSLGANCHLKAKDGT
TALEIAEKENQPVAVELLKKYMNKDFSVKEEKNLLDRYLATANLKDVDVVLIEQLLRKIC
IDSKDGSIIVFLPGWDEIVRTRERLLSSSFFNKRSKFKVVSLHSMVLASEINEAFMPAPH
GCRKIVLSTNIAETAVPLDDLVYVIDTGFVKEKSYDPCKDLFTLQSSWISKASAKKREGC
ASRCHPGACYHLYSKVQADSLLDFQDPEIKRMPIEELCLQVKLFDPSCKIEEFLSQTLDP
PGFESIRSAARVLQEMGALTVDEHLTELGQKFGYLPVHPYTSRMLIFSILMNCLDPALIL
ACASKCKDLFVLPILPDEKKRAVAARSELASLYGGCGDQFTIIAAFQCWVNAKKMGLESR
FCSQYFVSESAMSKLDVMRKNLAAELYRNGLINRSRNYCSNAYDPGILQAVLVAGMYPMV
GKLVFPYGSGKKILLNTKSIDSVCLNSHTLDYRLSSQKSLDCSFVVYDEITSIDWDLRIG
NCTVVGLLPLFLLSKEIDVDHAKHCTDNIITVIIDGWLNFESTAFDAFHMNYLRELLTAT
IIYKVTYSTDVLPPVLQAAVDSLACILSCHGRYCIPLVSDCAMKQTNTKKFQTEAIENPT
KKANMTLEGFCTGLINHNDFPSRASIYTGAEKPRYPARRNTETGSACSIQSAHLPKYSYS
KGTCYEKIMVGWSFPDVGWIKANVDGSYRGRKHQTSCAGVFRDHKGSWCFGFTLNLGTFC
FGSSDPMCSGFCVESELWGILTALKLGKEKKISKLWIESDSSTAVDCVVQKRAEKSDAFT
PLVESILELMEGNWTVRISHCYREGNRVADWLSKFGHSKEIGLQVYDVPPDPDDLHEILT
QDSTGVSRHRYVRLKAS
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacacagatgaggccgaggccgagccgtcttgccaaattgccattaccgaatcc
ttcatcgacgaacactccgaagttctatgggaaaagtatttgaaaattctgaaagaattt
atagcctccaacgatgaagtttacacatttcatggtaacttgtctggtgaagagcgcaag
gcagtggatcagttatgccacctcatggagttaggtgtaagattctgtgggactgcaggt
gagcagaaagtaattgctttcaaagtgaataacgaagcctcaaatcatattcaggccgtc
ctgtccaggaaaaggaagaacagagaggacccaagcttgtgtggtgagaatgcagagttt
ggtgaattgaataaaatctggatttcccaaacattagaaaaatttgcagcttcaaatgat
gaagtgtacacttttgaaaataaattgactggtcaagaagatgatttagtgtataacttt
tgcagggaaagaggttttatatatactctttctcggaatgggattaaacggagagtatgt
gttcgtaagaccggagaggaagttgacagtactaccttggtagagaatcttccttatgtg
acttgttcagatgaatcagatcagattgacaagcttaaacaatctgaaaaggaagtggag
ccagagccagagtcagctcaacatcagaatttcattgttattgttcctaaaagggttcgg
atttccaagatattgaaagattttttagcttcagaagatgaagtctacaattttgaagat
gaattgtccactagtgatcgtgatcttgtgaggcatttctcccgaaaaatggggcttagt
tgtaacatttctggaaagaaaacatctgttcacaaaaccaaaaaggaggttgctaccacc
agggtgtcgggttgtcatcctcacatcacatttcctgaacagtcaactccgaatagaaag
gagacagtggcatcaggacaacaaaatcccattattgatgaatcaacaaggattcagatt
taccaaacatcagaaaaattttcagcatcaaaagtaaacaattttgaagccaacttgtct
tctgaaaaatgtgttgcagtgcatcaactatcccaggaaaattcggggagtgggatgagg
cagaaagcatctgtgcacgaaactgaaaagaatattcacaccactgctaagttagagaat
cttccttgtttcacattttctggacagtcaaagcgtgtattagcaaatttacttaagcaa
tatcctcctggtgatgaggaactctggcgagccatgattgaagcatatggtgatactacc
gatagaacagaagaaaaggaagatgatgttttcaggaggccttgtatgagcaaagttgaa
attactaagagattggagattccttctaaaggaacgaaggattcctttaaattgaaactg
atcaacgaaaagagatctaagcttccaatcacattcttcaaggacatcattacatcagct
gtagaatctcaccaggtagttatcatatgtggtgagactggttgtggaaagactactcag
gtcccccaatatatattggatcacatgtggggtaagggtgaggtctgcaaaatagtttcc
actcagctgcaatctttgtcagcaatttcagtttctaagagaatctccagtgagagagga
gaggttattggaaacaatgttggatacaaggtacagtttgaaagtgaaggtggaaggcac
tcatcaattgtgctgtgtactcctggagttctattgaaggctttggcttctacaggttcc
catttttcggagagacagcatgtgaagggtgacgtttctagtattactcacataattatg
gatgagattgacgaaagggacagctactcagacctcatgttggcaatcctcagagagatc
ctgccttcaaatccccacctacgtctgatactgatgagtggtagttttgatgctacaaga
ttttctcaatattttggtgtctgcccaattatctatgttccaaggctcacgtatccggta
aaaaattactacttggaggatgtactttctattgtaaaatcaggtggagataaccatgag
cttagtcaagtagaaaagctgtctctagatgaagcaatacatttggcttggtctaatgat
gactggtgctcactattagagcttgtgtatcgtaaagctaagccaaaggtttttgattat
cagcattcattaactggcctcaatgcattaatggtgtttgctggaaaaggtaaagtggat
gatatgtgcatgctcttatcattaggggctaactgccatttaaaggccaaagatggaaca
actgctttagagatagctgagaaagaaaaccagccagtagctgttgaattgctgaagaag
tacatgaataaggatttttctgtcaaagaagagaaaaatttactagatagatatcttgca
acagccaaccttaaagatgttgatgttgttctgatagaacaacttttaagaaaaatatgt
attgattcaaaagatggaagcatcattgttttccttccaggctgggatgagatagttaga
acacgtgaaagattactttcatcctcatttttcaataaaagatcaaagtttaaggtggta
tctctgcattcaatggttctggcctctgagataaatgaggcttttatgcctgcaccccat
ggttgtcgcaaaattgttctctctacaaatattgctgaaactgctgtccctctggatgat
ttagtttatgttatcgatactgggtttgtcaaagaaaaaagttatgatccttgcaaagat
ttgtttactctccaatcatcttggatttcaaaagctagtgctaagaaaagagagggatgt
gctagtcgctgtcatcctggagcttgttatcatctatattcaaaagttcaagcagattct
ttgttagattttcaggatcctgaaattaagagaatgcctattgaggagctgtgtttgcag
gttaagttgtttgatccaagctgtaaaatagaagaatttttgagtcagacattagatcct
ccaggttttgagtctatacgaagtgctgctagagttcttcaggagatgggggcattgaca
gttgatgaacacctgacagagctagggcagaagtttggctatcttcctgttcatccatat
acgagcaggatgcttattttttccatattaatgaattgcctcgatccagctttaatactt
gcatgtgcatctaagtgtaaagatctatttgtgcttcctattttacctgatgaaaagaag
agagctgtagctgctagatctgagcttgcttcgttgtatgggggttgtggtgatcagttt
actataatagcagcatttcaatgctgggttaatgcaaagaaaatgggtctagaatcacgg
ttttgttctcagtactttgtttctgaaagtgctatgagcaagttagatgtgatgcggaag
aatttagctgcagaactatataggaatgggcttattaataggagtagaaattattgctct
aatgcctatgatcctggtatacttcaagctgttttggtagcagggatgtacccgatggtt
ggcaaattggtttttccttacggaagtggaaagaagattcttcttaacactaaaagtatc
gatagtgtttgcttgaatagtcatactttggattataggttatcatcacagaaaagtctt
gattgctcttttgttgtatatgatgagattactagcatcgactgggacttgcgcataggg
aactgtactgttgtcggactacttccattatttttgctttccaaagagattgatgttgat
cacgcaaagcattgtactgataatataatcacagtaatcatagatggatggcttaatttt
gagtcaacagcattcgatgcttttcacatgaactacctgagagagctattaacggcaaca
attatatacaaagtcacatattccacggatgttcttcctcctgttctacaagccgcagtg
gattccctagcttgcattctttcttgtcatgggcgttattgcataccactagtctcagat
tgtgctatgaaacagactaatacaaaaaaattccaaacagaggctattgaaaatccaaca
aagaaagccaacatgactcttgaaggattctgtacagggcttataaatcacaatgatttt
ccttctagagctagcatatacacaggtgcagaaaagcctaggtatcccgcaagaaggaac
actgaaacaggttcagcttgttcaatccagtcagcacatctaccaaagtatagttattcg
aaggggacttgctatgaaaagatcatggttgggtggtcctttcctgatgtgggatggatt
aaagctaatgtagatgggtcttataggggtcgtaaacatcaaactagctgtgcaggagtt
ttccgtgatcacaaaggttcttggtgttttgggttcacgttaaatcttggaacattctgt
ttcggatcatcagatccaatgtgtagtggcttttgtgtggaatctgaactgtggggtatc
ctgactgccctgaagcttggtaaggagaaaaagatttcgaagctgtggattgagtctgat
tcttctacagcagtggactgtgttgtgcaaaaacgggcggagaaaagtgatgcttttact
cctcttgttgagtccatacttgagttgatggagggaaattggacggttcgaatctctcat
tgttatcgtgaaggaaaccgagtggctgattggttgtcaaaatttgggcattctaaggag
ataggtctccaagtctacgatgtccctcccgatcccgatgatttgcacgaaatcttaact
caggattctactggagtttctagacaccgatatgtacgtcttaaggcatcatga
DBGET
integrated database retrieval system
