Vigna unguiculata (cowpea): 114187815
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Entry
114187815 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114187815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114187815
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114187815
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114187815
mRNA degradation factors
3'-5' decay
Ski complex
114187815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATF7IP_BD
Motif
Other DBs
NCBI-GeneID:
114187815
NCBI-ProteinID:
XP_027931990
LinkDB
All DBs
Position
6:complement(20239399..20259628)
Genome browser
AA seq
1337 aa
AA seq
DB search
MDPIYAANELAFRVGFSGHSGHLRLEPLTTPERHNPLRSIPDYIPPPAFPSETPESIKKY
IEETYLQPRLDPDEFSPEKVGRQWEFDWFDRAEVPLEPSLPRTMVIPVWEPPFRRSNNGS
VKGIWEPKFEEVDVSDLKLGETESGPLPRTSGKDFVRGSINNRPFRPGGLDDSRSVERIL
PEGASNGEWVREIFNGGPAQTIPPSLKHGLDFGELKSHPCSWNVCKEANPLQSSSVEKLS
ELSVQFDDLFKKAWEEDADGEQEQDEVESVILETEVGTTEVSSKPHDSEMSLDDILLVDS
DGPKLHLDGFSDEIEQQKKEAWAMHESSDRIVECFHELVPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVDRGVVWEEVII
MLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLYHSGELYKICE
SETFLPQGLKAAKEVSRKRNLTAGGASGPKVGISAGHENARGSKRENTSRMKQHGANFSG
TGRGYQNNSNGQSYWELRRADASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSLTGT
DLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEM
LFCRGVIKVLFSTETFAMGVNAPARTVVFDSLRKFDGKEFRQLLSGEYTQMAGRAGRRGL
DKIGTVILICRDELPEESDLKRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRS
FAEFHAQKKLPEMQQLLKRKLDQPRKAIECIKGEPTIEEYYDLYSEAETYNNQISEAILQ
SPSAQQFLNRGRVVIVKSESAQDHLLGVVVKTPSPSNKTYIVFVIKPDMPSLMQSASGGT
MQNKSGAFDQGYFVMPKSRRGLLDEYSTSVSARKGKGIINITMPYCGSASGMGYEVREVD
SKEFLCICSSKIKIDPVGLLEDVSSSVYSKTVQLLVDLKSDGNKYPPALDPVKDLKLRDV
KLVATYQKWTRLLEKMSQNQCHGCIKLEEHLKLAKEIKKHEEEVYALQFQMSDEALKQMP
DFQGRIDVLKKIECIDEDLVVQMKGRVACEMNSGEELICTECLFENQMDELEPEEAVAIM
SAFVFQQRNTSEPSLTPKLAEAKHRLYKTAIRLGELQAQFNLPINPAEYAQENLKFGLVE
VVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASN
AIKRDIVFAASLYITGV
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatctatgcagccaacgagctcgctttccgggtcgggttctccggccacagt
ggtcacctcagactggagccgctcaccacgccggagcgccacaacccgctccgttccatt
cccgattacattccgccacctgcctttcctagcgagacacctgaatctataaagaagtac
atagaagagacgtatctccagccaagattggatcctgatgaattttcaccagaaaaagtt
gggaggcagtgggagtttgactggtttgacagggctgaagttcctctcgagccatcacta
ccacgaactatggtcattccagtttgggaaccaccatttcgacgttcaaacaatggatca
gttaaaggaatctgggaaccaaaatttgaggaggtggatgtatccgatctgaagttggga
gagacagaatctgggccattaccacgcacttctggaaaggactttgtaaggggaagcatt
aataatcgtcctttccgtccaggaggtttggatgattctagaagtgtagaaagaattctt
ccagaaggtgcttcaaatggtgaatgggtgcgtgaaattttcaatggtggtcctgctcaa
acaattcctccaagcttaaagcatggattagactttggcgagctcaagtcccatccatgc
tcatggaatgtctgcaaggaagccaatcctctccagagttcatcagttgaaaaattgagt
gaattgtccgtacagtttgatgacttgtttaagaaggcttgggaagaagatgctgatgga
gaacaagaacaagatgaagtggagtctgttatattggaaactgaagttggtacaactgag
gtgtcaagtaaaccacatgatagtgaaatgtcacttgatgatattttgttagttgactca
gacggaccaaaattgcatttggatggatttagtgatgaaattgaacagcagaagaaggaa
gcttgggctatgcatgagtccagtgatcgaattgtggagtgctttcatgaacttgttcct
gacatggcactagagtttccctttgaattggatgcatttcagaaagaggctatttattat
cttgagaagggggagtctgtttttgttgctgctcacacatcagctggaaaaacagtagtt
gccgaatatgcatttgctttagcatcaaaacattgcactagagcagtgtatactgctcca
ataaaaacaatcagcaatcagaaatatagagatttctgtggaaagtttgatgttgggctt
cttactggggatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctaccggggtgctgatataattcgggacatcgaatgggttatattt
gatgaggtgcactatgtcaatgatgtagatagaggagttgtttgggaagaagtaattatc
atgcttccgagacacatcaatatcgtcctcctttctgccacggttcctaatactattgaa
tttgccgattggattggcaggacaaaacaaaaggaaataagggttacaggaacaacaaaa
agacccgtcccattggagcactgcctgtatcattctggagaactttacaaaatttgtgaa
agtgaaacatttctgcctcagggattgaaagctgctaaagaagtttcaagaaaaaggaat
ttgactgctggtggtgcttcgggaccaaaggtgggtatttcagcaggtcatgaaaatgcc
agaggttcaaaacgtgaaaatacatctcgcatgaagcagcatggagctaatttctctgga
actggtagaggctatcaaaataatagcaatggccagagctattgggaattgaggagagca
gatgcttcaatgtggttgatgcttatcaacaagctctccaaaaagtcattattgcctgtg
gttatattttgtttttctaagaatcgctgtgataaatcagctgatagtctgactggaact
gacttaactagtagctcagagaaaagtgagatccgacttttctgtgacaaagcattttcg
cgactgaagggatctgacagaaatttaccacaggttgttcgagtacagaatcttcttcgc
agaggtattggtgtacatcacgctggccttcttccaattgtaaaggaagttgttgaaatg
ctcttttgccgaggggttatcaaggtcttgttttcaaccgagacatttgcaatgggagtc
aatgcacctgctagaacagtagttttcgattctctaaggaagtttgatggcaaggaattt
aggcagttactatccggagaatatactcaaatggctggtcgtgctggcagaagaggactt
gacaagattggtactgttattctgatatgtcgtgatgaactcccagaagagagtgattta
aagcgtgttattgttggaagtgcaactcgacttgaatctcaatttcggctaacttatatt
atgattctacatcttcttcgggttgaggaattgaaggtagaggacatgcttaaaagaagt
tttgccgaattccatgctcagaaaaagcttccagaaatgcaacagcttttgaagcgaaaa
cttgaccagcccagaaaggctattgaatgtataaagggtgaaccaaccattgaagaatac
tatgatttatattcagaagctgaaacatacaacaaccaaatatcagaggcaattttgcag
tctcctagtgcccaacagtttctcaataggggaagagttgtaattgtaaaatcagaatca
gcgcaggaccacttgcttggagtggttgtgaaaactccatcacccagtaataagacatac
attgtttttgtgattaaacctgacatgccatccttgatgcaaagtgcctccggtggtact
atgcagaataaaagtggtgcatttgaccaaggttattttgtaatgccaaaatcaagacgt
gggcttctagatgaatatagtacatctgtttctgcccgcaaaggaaaaggtatcatcaac
atcacaatgccctattgtggctctgccagtggaatgggctatgaagttcgagaagttgac
agtaaagagtttctgtgcatatgcagtagcaaaattaaaattgacccagttggacttctt
gaagatgttagcagttctgtttattcaaagactgttcagttgcttgtggatttgaaatca
gatggaaataagtatcctccagctttggatcccgtcaaagatctgaagttgagagatgtg
aagcttgtggcaacataccaaaagtggactagattattggagaagatgtcccagaatcag
tgtcatgggtgtataaaattggaagaacacctcaaattggcgaaggagattaaaaagcat
gaagaagaagtatatgctcttcagttccaaatgtcagatgaagcacttaaacagatgcct
gactttcagggccggatagatgttctgaagaaaattgaatgcattgatgaagaccttgtt
gttcaaatgaaaggtcgtgttgcttgtgagatgaattctggggaggaactgatatgtacg
gagtgcttgtttgagaaccaaatggatgaactggaaccagaagaagcagtagctataatg
tcagcttttgtgttccaacagaggaatacgtctgaaccgtcactcacacccaagctcgcg
gaagctaaacacagattgtacaaaacagctataaggctcggagagctccaagcgcaattt
aatctgccaataaaccctgccgagtatgcccaagaaaatctaaaatttggtcttgtagaa
gtggtttatgaatgggcaaagggtactccgtttgctgaaatatgtgagcttactgatgtt
cctgaaggcctgatagtaaggaccattgtcaggttggacgagacatgtcgggagttcaaa
aatgctgcagcaataatgggtaattctgctctctgcaaaaaaatggaaattgcttctaat
gcaataaagcgtgacattgtatttgcggctagcttgtatattactggtgtatga
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