KEGG   Vigna unguiculata (cowpea): 114190624
Entry
114190624         CDS       T06017                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vun  Vigna unguiculata (cowpea)
Pathway
vun03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vun00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114190624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vun03041]
    114190624
Spliceosome [BR:vun03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    114190624
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_TEP1_C PRP4 Beta-prop_WDR75_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_SCAP eIF2A WD40_like
Other DBs
NCBI-GeneID: 114190624
NCBI-ProteinID: XP_027935386
LinkDB
Position
7:3545537..3550835
AA seq 565 aa
MEVEKENVTAEPSLPASDGQDTISDNSSLPHSIQTIIPPVIAPSVVPPLAPIPTIPPPRP
LAPLPVRPPVIRPPVPQNGEVRSSDSDSDNDDSNTRINQGTGEYEISEESRLVRDRQEKA
MQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQL
EKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQ
RRRDDPDEDMDAEIDWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKL
WNMPKIKKHSTVKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRL
ARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSLYGLAFHRDGSLAASCGLD
SLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIP
AHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGH
IVTVSHDRTIKLWSSNTNEQAMDVD
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggaagtggaaaaggaaaatgttactgcagaaccatctttacccgcctccgatggtcaa
gatactatttctgataattcatctctgccccattcaatacaaactattattcctcctgtt
attgcaccttctgttgtgcctcctttagcgccaattcccacaattcctccccctcgccca
ctggcaccacttccagttcggccaccagttattaggccacctgtgccacaaaatggcgag
gttagatcaagtgactctgactcggacaatgatgactcaaatacaagaattaaccagggg
actggggagtatgagatatctgaagagagtagactggtgagagatcggcaggaaaaggca
atgcaggaactcatgatgaagaggcgggcagctgctcttgctgtacctacgaatgatatg
gctgtgcgagctcggcttcggcatcttggtgagccaataactctgtttggtgagagagag
atggagaggagggacaggttacggatgattatggcaaagctagatgcagaaggtcagctg
gagaagctgatgaaagctcatgaggacgaagaggctgcggcttctgctccaaaagacgaa
gctgaggaagaactgcagtatcctttctacactgaagggtcaaaggctctcctggatgcc
agaatttatattgccaaatattctttggcaagggcagcattacgaattcaacgtgcacag
agaagaagggatgatccagatgaagatatggatgcagagatagattgggcattgaagcag
gctgggaatttgagtctcgaattcagtgaaattggagatgatcggcccctttctggttgc
tcattctcaagggatggaaaatggcttgccacctgttctctgacgggagcttccaagttg
tggaacatgcccaaaataaaaaagcattccaccgtgaaggggcacacagaacgtgctaca
gatgttgctttttctcctgttcatgatcatttagcaactgcctctgctgatcgaacagca
aagtattggaatgatcaaggatcacttttgaagacatttgagggtcatctggaccgtctt
gcccgcattgccttccatccatcagggaagtacctgggcactgctagttttgacaagaca
tggagattatgggacatagaaacaggggaggagttgcttcttcaagaaggacatagtaga
agtttgtatggcctggctttccatcgcgatggatcattagctgcatcttgtggactagac
tctctggctcgtgtttgggacctccgaactggaagaagtattcttgctctggaaggtcat
gtgaaaccggttcttggcatcagtttttcacctaatggatatcatctagccactggtggt
gaagacaacacgtgtcggatttgggatttgaggaagaagaaatccttttatactattcct
gctcactcgaatttaatatcacaagttaaatttgagccacaagaaggttactttttggta
actgcctcgtatgacatgactgctaaggtttggtcaggccgtgactttaagcctgtgaag
acactatctgggcatgaagcaaaagttacctctgtggatgttcttggagatggcggccac
attgttaccgtctcccatgatcgcaccataaaactgtggtccagcaatacgaacgaacaa
gcaatggatgttgattaa

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