Vigna unguiculata (cowpea): 114191075
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Entry
114191075 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114191075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114191075
03012 Translation factors [BR:
vun03012
]
114191075
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114191075
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114191075
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114191075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
AAA_19
BEX
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
114191075
NCBI-ProteinID:
XP_027936035
LinkDB
All DBs
Position
7:complement(1397274..1407643)
Genome browser
AA seq
1030 aa
AA seq
DB search
MRSNLLRPTFNISHRSLAFLHLPSPKSFLANLPISSSVMAYRPNYQGGGRRGGSSAAGRG
GGRRGGGGGRGGRGEQRWWDPVWRAERLRQQQAEKEVLDENEWLDKIEKMKRGGEQEMVI
KRNFSIADQKTLADMAYQHELYFHAYSKGKILVVSKVPLPDYRADLDERHGSTQKEIRMS
TDIERKVGNLLNSSHSMGAAPSSSRSVSTDLGPKQSAITIKTVSSQQTDTSKEKLSVELK
EKQELVQASDSLKEMKSFREKLPAFKMKSEFLKAVQENQVLVVSGETGCGKTTQLPQFIL
EEEISCLRGADCNIICTQPRRVSAISVATRISSERGESIGETIGYQIRLESKRSADTRLL
FCTTGVLLRQLVQDPDLKGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSAT
INADLFSKYFANAPTIHIPGFTYPVSEYFLEDVLEKTRYSIKSDFDNYEGNSRRRRKQQD
SKKDPLTEMFEDIDVDTNYKDYSLGVRKSLEAWSGVQIDLGLVESTIEYICRNEGSGAIL
VFLTGWDEISKLLDKLKGNNLLGDPHKFLILPLHGSMPTVNQCEIFDRPPPNKRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC
YRLYPKLIHEAMPQYQLAEILRTPLQELCLHIKSLRLGTVGSFLEKALQPPDPLAVKNAI
ELLKTVGALDEHEELTPLGRHLCNIPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRNPF
VLPINRKEEADAAKQSFAGDSCSDHIALLKAFEGWKDAKRSGNEKQFCWDNFLSPVTLRL
IDDMRMQFLNLLSDIGFVDKSRGPNAYNQYSHDLEMVCAILCAGLYPNVVQCKRRGKRTA
FYTKEVGKVDIHPASVNAGVHLFPLPYIVYSEKVKTTSIYIRDSTNISDYALLLFGGNLV
PSKSGEGIDMLEGYLHFSASKSVIDLIRKLRGELDKLLNRKIEEPGFDVSSEGRGVVAAA
VELLHSQVIR
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagcaaccttttgcgccctactttcaacatatcccatcgtagcctcgctttcctg
cacctgccctcacccaaatctttcctcgccaaccttccgatttcctcctccgtcatggcc
taccgccccaactaccaaggcggcggccgcaggggaggatcctccgcagccggtcgagga
ggcggccgccgtggaggtggtggaggacgcggcggacgcggcgagcaaaggtggtgggac
cctgtttggcgcgccgagcgcctcagacaacaacaagccgagaaggaggtgctagacgag
aatgagtggttggataagatagagaaaatgaaacgaggaggggagcaggagatggtgatt
aagcgtaactttagtattgcagatcagaaaaccctagctgatatggcctatcagcatgaa
ctctacttccatgcttacagtaaagggaagattctcgttgttagcaaagttccattgcct
gattatcgtgcagatcttgatgagcgtcatggatcaacacagaaggagattagaatgtcc
actgacattgagaggaaagtaggaaaccttttgaatagttcacattcaatgggtgcagcg
ccctctagttcgcgctctgtgtcaactgaccttggacctaaacaatctgcaatcactata
aaaactgtttcttcacaacagactgatacttcaaaggagaaacttagtgttgagctcaaa
gaaaagcaagaacttgtacaggcaagtgatagcttgaaggaaatgaaatcatttagggag
aagcttcctgcatttaaaatgaagtctgagtttctaaaagccgttcaagaaaatcaggta
ttagtagtttcaggagagacaggttgtggtaaaacaacacagttgccacaattcattcta
gaagaagaaatatcgtgcttgcgtggagctgattgcaacataatttgcactcagcctcgt
cgggtgtctgctatatctgttgcaactcgaatatcttctgagagaggtgagagtattgga
gaaacaattggatatcaaatccgtcttgaatcaaaacgttctgcagatacgcgcctgctt
ttctgcaccaccggtgttttacttcggcagttggtacaagacccagacttgaaaggtgtt
agtcatttgctggtggatgaaattcatgaaagaggcatgaatgaagactttttaattata
attttacgtgaccttcttccacgacgtccagatttgcgtctcattttgatgagcgccact
attaatgctgatttgttctctaaatactttgcaaatgccccaacaatacacataccggga
tttacttatcctgtgtcagaatacttcttagaagatgtgttggagaaaactcgatacagc
atcaagtcagattttgacaattatgaggggaattcaaggaggagaaggaaacaacaggat
tcaaagaaggatcccttgactgaaatgtttgaggatatagatgtagatactaattacaaa
gattacagcttgggtgtaagaaaatctcttgaagcttggtcgggtgtgcagattgatttg
ggattggtagagtctacaatcgaatatatatgtcggaatgaaggtagtggagcaattctt
gtatttctcactggctgggatgaaatctctaaactacttgacaaacttaaaggaaataac
ttacttggagaccctcacaagtttttgatccttcctttacatggctcaatgccaactgtc
aaccaatgtgaaatatttgatcgtcctcctccaaacaagaggaaaattgttctagcaaca
aatattgctgagagtagcatcaccatagatgacgttgtgtatgtcatagactgtggcaaa
gcaaaggagaccagctatgatgctctaaataagcttgcctgcttgttgccatcgtggatt
tcaaaggcttcagctcatcagagacgtggacgtgctggtcgagtgcaacctggagtttgt
tataggttgtatccaaaactgatccatgaagcaatgcctcaataccagttagctgaaatc
ctccgaacacctttgcaagagttgtgccttcatattaaaagtttgcggcttggaactgtg
ggatcatttttagaaaaggcacttcaaccaccagatcctttagctgttaagaatgctatt
gaacttcttaaaacagttggggcattagatgaacacgaggagctcactccactgggtcgc
catctttgtaacatacctttggacccaaatataggaaagatgcttctcatgggctctatc
ttccagtgcctcaatcctgccttaactattgctgctgctcttgcttaccgcaacccgttt
gtcttacccataaacagaaaagaggaagctgatgcggcaaaacaatcttttgctggtgat
tcttgcagtgatcacatagcccttctcaaagcttttgaagggtggaaggatgcaaagcga
agtgggaatgagaagcagttttgttgggataatttcctgtcccctgtaaccttgaggttg
attgatgatatgaggatgcagtttcttaatttattatctgacattggatttgttgacaag
tccaggggacctaatgcttacaaccagtacagtcacgatttggagatggtttgtgcaatt
ctttgtgccgggctgtaccccaatgttgtgcagtgcaaaagaagaggaaaaaggacagca
ttctacactaaagaagtagggaaggttgacatccatcctgcttctgttaatgctggggtt
catctctttcctctgccctacattgtgtatagtgaaaaggtgaaaacaaccagcatctat
attagagactctacgaatatttcagattatgccctacttctatttggtggtaatttagtc
cccagcaaaagtggtgagggcattgacatgcttgaaggttaccttcatttctctgcttca
aaaagtgttatcgacttaataaggaaattacgtggggagcttgacaagcttctgaacaga
aaaattgaagaacctggatttgacgtttcttcagaaggaaggggtgtggttgccgctgct
gttgagttactgcacagtcaagtcattagataa
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