Vigna unguiculata (cowpea): 114191417
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Entry
114191417 CDS
T06017
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114191417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114191417
03019 Messenger RNA biogenesis [BR:
vun03019
]
114191417
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114191417
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114191417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
114191417
NCBI-ProteinID:
XP_027936389
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All DBs
Position
7:36505186..36507311
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AA seq
540 aa
AA seq
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MSERQQMQYSECNQFSTSITYSPSNRYQPEILRALIYAYGKEESQECPSSKPLLVEQMDR
NCVDNNVWSKPWQNTEEEEFDWEALKSNIVHHSGNKSSLPSTVGFSNEIPVVAASATLSE
QNGSKGWPSSGSQLPPLHDSSAMAIKHSLVSSQFHDAMKVSQHRYNSSQHIFSKSYENPN
GVRHAGPIMVSGIPSNVKPHSPVVPASSETTHSLNQNVTRSAIMKHAVNSSLIVPAQSIG
AFENKDANATHMNQFPNKLPAQVSSDQKHHWETPHPMFFPSQDPSTSQYSHGMSFLNTLP
SPLPSITNYPFHPRVLSQMMIPRPDVEDTDLHTSQISHAVISSDKPLPPQNSIGTEFKAG
NLKVPLESVVNCLYADLPRQCRSCGLRFRSQEEHRSHMDWHVTKNRRQRLCRQWFVSSRM
WLSGAEAVGTKSVPAFFPTETKEETKDEEEWAVPAEDEQIACALCKEPFDKFYSDEMDDW
VYRGAAYLYQPTGKLATTLDRSELGPIIHAKCRSQPRMPHSQHLGKDDYEEGYSSKRMRI
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaggcaacaaatgcagtattctgagtgtaatcaattttctacttcaatcaca
tacagccctagtaatagatatcagcctgaaatattaagagctttaatttatgcatatggc
aaagaagaaagccaagaatgtccaagcagtaaaccactgttagttgaacagatggataga
aactgtgtagacaataatgtgtggtcaaaaccatggcagaatacagaagaggaggagttt
gactgggaagctttgaagtcaaacatagtacaccatagtggaaataaaagttcattacct
tcaactgttggtttctccaatgaaattcctgttgttgcagctagtgcaactttgtcagag
caaaatggcagcaagggttggccttcttctggatctcagcttcctccactacatgattcc
tctgctatggcgattaagcatagtctggtctcctctcaatttcatgatgctatgaaggtt
tctcaacatcgctataactcgtctcaacatatctttagtaaaagttatgaaaacccaaat
ggggttagacatgcagggccaataatggtttctggcattccctctaatgtgaaaccgcat
tcaccagttgtgcctgcttcttctgaaacaacacattctctaaatcagaatgtcactcga
tctgctattatgaagcatgctgtaaatagctctctgattgtaccagcacagtcaattggc
gccttcgagaacaaggatgcaaatgctacacatatgaatcagtttcctaacaagcttcca
gcccaagtttcttccgaccagaaacatcactgggaaacaccacaccccatgttttttcca
tctcaggatccatcaacctcacagtatagtcatgggatgagttttttgaatacgttacct
tcaccactcccaagtattacaaactacccttttcatcctcgtgttttatctcaaatgatg
atacctcgtccagatgttgaagataccgatttacatacttctcaaatttctcatgctgtc
atctcatcggataaaccgctgccgccacagaattctatcggaaccgagtttaaagcaggc
aatctgaaggttccgcttgagtctgtagtgaattgcttgtatgctgatctcccgagacaa
tgcagaagttgtgggctcagattcagaagccaagaggaacacagaagtcacatggattgg
cacgttaccaagaatcggaggcagagattgtgtcgtcaatggtttgtgagttcgaggatg
tggcttagtggtgcagaggcagtgggaacaaagtcagttccagctttttttccgacagaa
acaaaagaagaaacgaaagatgaagaagagtgggcagttccagctgaagatgaacagata
gcatgtgcattgtgcaaagagccttttgataagttttacagtgatgaaatggatgactgg
gtgtacagaggagctgcatacctgtatcaacccacaggaaaattagcaacaaccttggac
aggtctgagttaggtcccataattcatgctaaatgcagatcacaacctagaatgcctcac
tcccaacatcttggaaaggatgattatgaagagggttactcaagtaaacgaatgcggatt
tga
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