Vigna unguiculata (cowpea): 114191804
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Entry
114191804 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114191804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114191804
03012 Translation factors [BR:
vun03012
]
114191804
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114191804
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114191804
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114191804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
T2SSE
Dicer_dimer
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
114191804
NCBI-ProteinID:
XP_027937004
LinkDB
All DBs
Position
7:37937621..37950432
Genome browser
AA seq
1192 aa
AA seq
DB search
MLSVTQPSCIPKTLKPFIPLPSPAMKDRRALSSYGSVYIPPHHRLRSVANFNNSPSPFRA
KPHENPTHTISTLQPPFTERVTDKARSRFVSAYDDTVSEEGSDHEFELPSVVRVSKFACP
NASLDDNTDEWKRKFTVLLNDKSKHELISREKRDRRDFDRIAVIASGMGLYSHIYAKVVV
FSKVPLPNYRYDLDDRKPQREVSLSFTTFTRVKEHFEEYLSQKSRMNKSCLDFSSARSSS
NCSIGMDEGLFEQPEPLASSKGVMEKIVWQRSLQMRDQQQAWQESAEGSRMLEFRRSLPA
YKKKEDILSVISRNQVVIISGETGCGKTTQIPQFILESEIESVRGASCNIICTQPRRISA
MSVSERVAYERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTHVI
VDEIHERGMNEDFLLIILKELLPFRPELKLILMSATLDAELFSSYFNGAPTMFIPGFTYP
VKTHFLENILEMTGYRLTPYNQIDDYGQEKMWKMNRQVPRKRKSQIASAVEDAIRAADFK
DYSPHTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISCLKEKLLTHT
VLGDPNRVLLLTCHGSMASSEQRLIFEEPEAGVRKIVLTTNIAETSITINDVVFVLDCGK
AKETSYDALNNTPCLLPTWISKVSSQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEI
LRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDETENLTILGR
YLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKTQFCGA
YSDHLALVRAHEGWKDAEMDMGGYEYCWKNFLSLQSMKAIDALRREFICLLKDTGLVDSN
AASCNAWSSDVNLIRAVICYGLYPGIASVVNNEKSFSLKTMEDGQVLLYSNSVNARETKI
PYPWLVFNEKIKVNSVFLRDSTAVSDSMVLLFGGSLLKGDADNHLKMLGGYLDFFMDPSV
VEMYQSIRRELDAFIQSKLIFPRMGIQWYHDLLYAVRLLISNDKCEGRFVFGRQVHKPSK
KSIMLASHPTLVSRTESGPGGDNSKSQLQTLLTRAGCAAPVYKTRQLKNNQFQAAVEFNG
MQIMGQPCNNKKSAEKDAAAEALQWLMGGKQAGREYINHLSMLLKKSKKDHN
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgctctcggtcacgcaaccttcgtgcattcccaaaaccctaaaacccttcattcccctt
ccgtctccggccatgaaggaccgccgcgcgctgtcctcctatggctccgtttacattccg
ccgcaccaccgtttgcgctccgttgctaatttcaacaactcaccctctccgtttcgcgcc
aaaccccacgaaaaccctacacacaccatttctactctgcaaccgccgttcacggaacga
gttaccgataaggcacgttcgcgcttcgtttctgcttatgacgataccgtttccgaggaa
ggctccgatcatgaattcgaacttccctcagtagtgcgtgtttccaaatttgcttgtcct
aatgcttcgcttgatgataacactgacgagtggaagcggaaatttaccgtgctcttaaat
gacaagagtaagcacgaattaatctcgagagagaaaagggataggcgtgattttgatcga
atagcagttattgcaagcggaatgggattgtatagccatatctatgctaaggttgttgtc
ttcagtaaggtcccacttccaaattacagatatgatttggacgatcggaagcctcagagg
gaggtgagcttgtctttcaccacatttacccgtgttaaggagcattttgaggaatatctt
agccaaaaatccaggatgaacaaaagctgtttggatttttcatctgcaagatccagcagt
aattgcagtattggtatggatgaggggctttttgagcaacctgagccactagcatcaagt
aagggtgttatggagaaaattgtttggcagaggagcttacaaatgcgtgatcagcagcaa
gcttggcaggaatctgctgaaggaagtagaatgctagaatttcgcagaagtctcccggct
tataaaaagaaagaagacatattatcagtcatatcaaggaatcaggtagttatcatttca
ggcgaaacaggttgtggcaagacaacacaaattccacaattcattttagaatctgagata
gaatcagttcgtggagcttcttgtaatatcatatgcacacagcccagacgcatttcagcc
atgtcagtttctgaaagagtggcctatgagaggggagagaaattgggcgaatctgttgga
tataaagttcgacttgagggtatgaaagggagagatacccatcttctcttttgcaccaca
ggcattttattaagaagattactagcagatagaaagttaaaaggcgtaactcatgttatt
gtggatgaaattcatgagcgtgggatgaatgaagattttctgcttattatccttaaagaa
ctccttccctttcggccagaactgaaactgattttgatgagtgctaccctagatgcagag
ctcttttcttcatactttaatggggctccgactatgtttattcctggcttcacatacccc
gtcaaaacccattttttggagaacattcttgaaatgacgggctacagattaactccttat
aatcaaattgatgattatggtcaagaaaagatgtggaaaatgaacagacaggtcccaaga
aagaggaaaagtcaaattgcttctgcggtagaggatgcaattagagctgctgatttcaaa
gattacagcccacatacacaggagtctttgtcatgttggaatcctgactgcattggtttt
agtctcatagaatatattttgtgcaatatatgtgagaatgaaagacctggtgctgttttg
gttttcatgactggatgggatgatataagctgtctgaaagagaaactcctgactcatact
gtcttgggagatccaaaccgtgttctgttgcttacatgtcatggctcaatggctagctca
gagcagagattaatatttgaagagcctgaagctggagtaagaaaaatagtgctaacaaca
aatattgccgaaaccagtatcacgataaatgatgttgtctttgttcttgactgcggaaaa
gcgaaagaaacatcgtatgatgctctgaacaacacaccttgtctgctccctacatggatt
tctaaggtttcttctcaacaaagaagaggaagagctggtcgagtacaaccaggagagtgt
taccatctctatcctagatgtgtgtatgatgcatttgcggagtatcaattgccagaaatt
ttgagaacacctctgcaatccctctgtttacaaattaaaagtttaagacttggaagcata
tctgagttcttgtccagggctttgcagtctcctgagatacttgcggtacaaaatgcaatt
gaatatttaaaaataattggagctttggatgagactgagaatctcactattctagggcgc
tatttgacaatgcttcctatggaacccaaacttggcaagatgctaatattaggtgctatt
ttcaattgcctggatcccatattaactgttgttgctggtcttagtgtgagagatcctttt
ctaacaccgttggataaaaaagatcttgcagaggctgcaaaaactcaattctgtggtgca
tatagtgaccaccttgcacttgtaagggcacatgaaggttggaaagatgctgaaatggac
atgggtggatatgaatactgttggaaaaactttctttccttacaatccatgaaagctatt
gatgctctgcggagagagttcatatgcctgctcaaggataccggattagttgatagtaac
gcagccagctgcaatgcatggagctcagatgtaaatcttatccgagcagttatttgctat
ggcctatatcctggaattgcttctgttgtgaataatgagaaatcattctctttgaaaaca
atggaggatggacaagtgctcctatattcgaactcagtgaatgctcgggaaactaaaatt
ccatatccatggcttgtttttaacgagaagataaaagtgaactcggtttttctccgcgac
tctacagctgtgtctgattcaatggtgcttctgtttggaggaagcttattgaaaggagat
gctgataaccatttaaaaatgttgggaggatatcttgatttttttatggatccgagtgtt
gttgaaatgtaccagagtatacggagagaactcgatgccttcattcagagcaaattaatt
tttccaagaatgggcatacagtggtatcatgatctcctatatgcagtacggctgctgatt
tccaatgacaaatgtgaaggtagatttgtatttggtcgccaggtccataaaccatctaag
aaatctattatgttggcctcacacccaaccttggtttcaaggactgagagtggacctggg
ggagataattctaaaagtcagctccaaacattgcttacgagagcaggatgtgcagcaccc
gtctacaagactagacaattgaagaacaatcagtttcaggctgcagttgaattcaatgga
atgcagataatgggtcaaccttgtaacaataaaaagagtgcagaaaaagatgctgcagct
gaggcattgcagtggctgatgggtggaaagcaagcaggcagggagtatatcaatcacttg
tcaatgttacttaagaaaagtaagaaggatcacaattaa
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