Vigna unguiculata (cowpea): 114192181
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Entry
114192181 CDS
T06017
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
vun
Vigna unguiculata (cowpea)
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vun03009
]
114192181
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
114192181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
RYDR_ITPR
TPR_Trm732_C
Motif
Other DBs
NCBI-GeneID:
114192181
NCBI-ProteinID:
XP_027937619
LinkDB
All DBs
Position
1:complement(40876424..40896199)
Genome browser
AA seq
2701 aa
AA seq
DB search
MATASHARAVKSLNKSSGRGRFVFKSFSERVDEIDINVYRSLEKVKAEPSEGSSFFRDCL
IEWRELNTAEDFISFYEEMMPYTQTLPLVLLHKESLISKLLSRLHIKARLSLDAILRLIA
ALSRDLLEEFVPLLPRIVDSLVSLLENGGDKEPDIIEQIFMSWSYIMMYLQKYLVRNPSE
VLKVTSKLRYYPNKYVRQFMAEAMSFVLRNAPDEQLERGIRRVIDDAVKKPSPCRESGAE
ALLFNIMKGYTSRFHSKAERVLQLLTSEAIYAVGDKVSQDSMAIVKIVKSVFKKLCETME
SKELNLVWNCLYKEADGCLNTGNIRHLQYILSVLVSAIKMQNGKKVPDYKPVLKLALRLV
QTFTKPCGVIDSQDMNLVVHRILKLMLAILKGLCNCNTSMIPECALQWAPIFRSGSSSLL
CFIRKLLQEDLCLFHFRSNVISAMNGLMEISEEEVIHLLQSFCEKMQLDKRDLVDGTSEE
EPLARICSRLQEIISCWKEKINDIARADVLCEIDEGMLAHLWGAVSCYSHMSIVGGNPSL
MVELMEALDHLLTAKAGYIGDMSKRALESIIGAALSSYNRLCNHTFCGADETGKFLSLAK
RYKLSPPVLLAVADYLEFKYGFSLENNGCRIYHPELEGKTADAVAIFSDNLHHSDKEIRI
STIKILRHYKPIVWESSSVDEAADMKNKTEVSPTSNADFTENNALLLLLSLETTPISIST
SRSVQLLISKIQMELSAGRIPNVYVPLVLNGLLGVLNNRFRYLWDPVLECIAVLISIHLT
HVWDSLVDYIERCQAIFLTPCNLHASDNGALFGRPTGLLDCFKSFVCHASDSTPTVTILE
LLLQALQKIPAVIESRSRQFIPLFLKFLGYNTLDLASVGLFDSVSCEGKEWKTILKEWLN
LLKLMKNPKSFYCSQFLKEVLQNRLLEENDPEIQMRVLDCLLIWKDDYILPYIEHLRSLI
NSKNLREELTTWSLSRESEYIEECHRSYLVPLVIRLLMPRVRKLKGLASRKKASICHRKA
ILSFVAGVDVIELPLFFVLLIKPLRIVKKTDGPANLFWTLPTGSINEFQDAALLEYFTFD
NIANLSWKKKYGFLHVIEDIVAVFDELHIRPFLDLLVGCVVRLLESCTLSLSANLNRLPS
DQHNCSPNSNSIGEDSVPTDQIQISGNLNQLKDMRSLCLKIISLVLNKYEDHEFCSDWWD
KFFSAVKPLIEKFKQETASSEKPSSLLSCFTAMSGNNKLVALLCWKESLVPDIFSIISVN
SASETVIYCVLKFVENLLNLDHQFNGEDNAAQTVLLSNIEVLMDSMCCLFGRDNAIKRKL
IKSPGETVIRIFKFLPKYIRDTKLAKQFVEILLLFMEKKTQNSDVWVEVLQVIQNILPTL
GHESTTKILSAVSPLYISAELDMRLRICDLLDALVASNTSILPVAKLLRQLNTTSTLGWL
DHDAILDAYRIINIDFFGSVQVEQALLILSHCVHDMSSEETTFMCSAHSSLLSFVDFSAL
ILHQEENSEEHISVMKNTDNCWTKSCIQRVAKKFLLKHMADAMDGSLSVIKGWIKLLHQM
VLKLPEVSNLKSLMVLCNEDGEAVFFDNISDSVIRKRVKALSWFQNVVSVNKLSEFITEK
VFLRLFFNMLFDEKEEKAEHMKNACIETIASVAGQMGWKSYYTLLIRCLRGASSNPDKQK
LFIRLICCILDKFHFYDKQPKEPLDVVSDMEMRDTDVNKEIQACLYKIVLPNIQKLLDSE
SEKVNVNISLAALKLLKLLPGDVMDLYLPTIVHRISNFLKRHLESIRDEARSALATCLKE
LGLEYLQFIVKVLQSTLKRGYELHVLGYTLNFILSKCLSTPVVGKIDYCLKDLLSVIEND
ILGDVADQKEVEKIASKMKETRKKKSFESLKLVAQNITFKSYALKLLAPVTSHLQKHITP
NVKGKLENMLSHIATGIESNPSVDQTDLFIFIYGIVEDGLKDEISWHENKLLLLEDKDSR
VKTKRISKGPVVAKGLLCSHLITVFGVRIFHKRMKSLKQDVKDENTLSLLDPFVKLLCDG
LSSKYEDILSTSLECLAILVRLPLPSLQQHAGRLKASLLDIAQGSVRSSSSLMQSCLKLL
SVLLRNTKISLTSDQINSLIHLPIFLDIEKNPSLVALSLLKGIVSRKLVVPEIYDVVTRV
AELMVTSQIEPIRKRCSKILLQFLLDYRLSEKRLQQHMDFLLLNLSYEHSTGRESILEMI
HTIIVKFPTSVLDEQSYSIFVRLVLCLANDNDYIVRAMAGNAIKKLVSSVSPNSLNSILD
YVLCWYLGGKQQLCGAAAQVLALLIEVKKKGFREHINSILPVTRHIFRSAIDAVTNWQEG
FSTESVIPLWNEAYYSLVMFEKMINQFGDLCFAEYLEDIWEAICEMLLHPHSWIRSISVR
LIALYFSHVTDASRENHGTSLRSYFIMSPSRLFLIATSLCCHLKMPVINDSDSSLMTQII
IFAICGVHSLMGQSACIDPPAFWSTLSQQEKDRFLKAFDLLDSRKGRSMFMSSSTASIFE
HSNQLNVDNAQRALVTLLLRKMGKIALQMDAIQMGIVFNSFGNIMAQISQDDCLHYAHVI
LLPLYKVCEGFAGKVVTENVKKLAEDTCRKLENILGTHNFVQVYNLTRKNLMLKRNKRRQ
EEKQMAVINPMRNAKRKLKISAKNRANKKRKIMTMKEGKLMAMRNAKGNFRISANKKRKN
L
NT seq
8106 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcttcacatgctcgagctgtgaagtctctcaacaagtcctctggtcgagga
cgttttgtcttcaagtcattctccgagagagtagatgagattgatatcaatgtatatcga
agtctcgagaaggtcaaagccgagccatctgagggttcttcattttttagagactgcctt
atagaatggagggagttgaacactgccgaagattttatctcattttatgaagaaatgatg
ccttatacacaaacattgccccttgtgctgttgcacaaggaatctttaatctcaaagctt
ctttcgaggttgcacattaaagcaaggctatcccttgatgcaattctcaggttaattgct
gctttatccagggatctccttgaggagtttgttccgctattgccgagaattgttgattct
ttagtatctcttcttgagaatggtggtgacaaggagccagatatcattgagcagatattc
atgtcatggtcttacatcatgatgtatctgcaaaaatatctagtacgcaacccatcagag
gtgctcaaggtcacgtcaaaactaaggtattatcctaacaaatatgtccgacaattcatg
gcagaagctatgtcatttgttttaaggaatgccccagacgagcagctggaaagaggaatc
aggagagtgattgatgatgctgtgaagaagccatcaccgtgtagagaatcaggtgctgag
gcactgctctttaatattatgaaaggttacacatccaggttccattcaaaagcagagcga
gtgttacaattgttgaccagcgaagcaatttatgctgtgggtgataaagttagccaagat
tcaatggccattgtgaaaattgttaaatctgtcttcaagaaactatgtgaaacgatggag
tctaaggagctgaatttggtatggaattgtttatataaggaagcagatggatgtcttaat
actggaaatattaggcacttgcaatatattttatcagtacttgtgtcagctataaagatg
caaaatggtaaaaaagtgcctgattataagcctgtcttgaaactagctttgcggcttgtg
cagacatttaccaaaccttgtggagttattgattcacaagatatgaatttagttgttcat
agaattttgaaattaatgctggccattctcaaaggactctgtaattgcaatacctcaatg
ataccagagtgtgccctccagtgggctccaatttttagatctggaagctcaagtttgctg
tgtttcattagaaaactgctgcaagaggatctttgtttatttcatttcaggagtaatgtt
ataagtgcaatgaatggtttgatggagatttcagaggaagaggtcatacatttgttacag
tctttctgtgagaaaatgcaattagacaaacgtgacttagtcgatggaacaagtgaagaa
gaaccgctggctagaatttgcagtcgtttgcaagagataatcagctgttggaaggaaaaa
ataaacgatattgctcgtgctgatgtattatgtgaaattgatgaaggaatgttggcacat
ttgtggggagcggtgagctgctattctcatatgtctattgtaggtggcaatccatccttg
atggtggaactcatggaggctctagatcatcttttgactgctaaagctggttacattgga
gatatgtctaaaagggccttggaaagcattataggtgcagcattaagttcttacaacaga
ttgtgcaaccacactttctgtggagctgatgaaactgggaagtttttaagtcttgcaaaa
cgatataaattgtctccaccagtgttgttggctgttgctgattatttggaattcaagtac
ggtttttcattggaaaacaatgggtgtagaatttatcatccagagctcgaaggaaagaca
gcagatgcagtggcaattttttctgataatttgcatcactctgacaaggagattcgcatt
tcaactataaaaatactacgccactataaacctatagtttgggaaagttcttcagtggat
gaggcagctgatatgaaaaataaaactgaagtttctccaacttccaatgctgatttcaca
gaaaataatgctctgctgttgctcctttctcttgaaacaactcctatttcaatttctaca
agcagaagcgttcagctattgatttccaagattcagatggaactatctgctggaaggatt
cctaatgtttacgtgcctctggttttgaatggattgctgggcgtcttgaataatcgattt
agatacctatgggatcctgtattagaatgtattgctgtcttgattagtatacatcttaca
catgtatgggatagtcttgttgattatatagaaaggtgtcaagcaatatttcttacccct
tgtaacttacacgcgagtgacaatggtgctttatttggtcgtccaactggtctacttgat
tgtttcaaatcttttgtctgtcatgcatctgatagcacaccaactgtaacaatattagaa
ctattactgcaagctttgcaaaaaattccagctgttattgaatctcgctctcggcaattt
attcctttatttttgaaatttttgggctacaacactcttgatcttgcaagcgtgggattg
tttgattctgtttcttgtgaagggaaagagtggaagaccatcttgaaagaatggttaaat
ttgttgaagctaatgaaaaatcctaagtcattttactgtagccagtttcttaaggaggtt
ctgcagaataggcttttagaagaaaatgatcctgaaatacagatgcgagttttggattgc
ttgttaatctggaaggatgattacattttaccatatattgagcatttaagaagcttgatt
aattccaaaaatttaagggaggaactgacaacatggagtttgtcgagagaatctgaatat
attgaagaatgccaccgatcttatcttgtgccattagttatccgtcttttgatgccaaga
gtaagaaagttgaaaggacttgcatctcgaaagaaagcgagcatttgtcaccggaaagct
attctgagtttcgtagctggagttgatgtcattgagttgcctcttttctttgtgctactg
ataaagcccttgcgaatagtgaagaaaacagatgggcctgctaatttgttttggacttta
cctacaggttctattaacgaatttcaagatgctgctttgttggaatatttcactttcgac
aatatagcaaatctatcatggaaaaagaaatatggttttttgcacgttattgaagacatt
gttgcggtttttgatgaattgcatattaggccctttcttgatcttctagtgggttgtgtt
gtccggttattagagagctgcactttaagtcttagtgcaaatttgaacaggcttccttca
gatcagcataattgtagccctaattcaaactctattggggaggacagtgtgccaacagac
caaatccagatcagtggtaatttgaatcagctgaaggatatgagatctctatgcctgaaa
attatttctcttgtactcaataagtacgaagatcatgaattttgttctgattggtgggac
aaattcttttctgcagtaaaaccacttattgagaaatttaaacaggagactgctagtagt
gagaaaccaagttcactgttatcttgctttacggcaatgagtggaaacaataaacttgta
gcactattatgctggaaagaaagtcttgtaccggatatattttccattatttctgtcaat
tcggcttctgaaactgttatatattgtgttttaaagtttgttgaaaacttgttaaacctt
gaccatcagtttaatggtgaagacaacgctgctcaaacagttttactttcaaatatagaa
gtactgatggacagcatgtgctgtttatttggaagagataatgcaatcaagagaaagctg
atcaaatctcctggggagacggtcataagaattttcaaatttttacccaagtacatcaga
gatacaaagttggcaaagcaatttgtggagatattgctgctgtttatggaaaagaaaact
caaaattctgatgtctgggttgaagttttgcaagtcattcagaacattttacctacacta
ggacatgaaagtaccactaaaattctaagtgctgtttctccattatatatttcggctgag
ttggatatgcgtttgagaatctgtgatcttcttgatgctcttgtagcttccaatacatct
atactcccagtggcaaaacttctccgtcagctgaatacaacatctactttgggttggcta
gatcatgatgctattttagatgcttacagaatcattaatattgatttcttcggaagcgtt
caagtcgagcaagcattacttatcttatcacattgtgtgcatgacatgtcatcagaagaa
acgacttttatgtgtagtgcgcatagttcattactgtcttttgttgatttttctgctctc
atccttcaccaagaagaaaatagtgaagaacatatctcagtgatgaaaaacactgataac
tgttggacaaaatcttgcatccagcgtgtggccaagaaatttctcttgaagcatatggca
gatgcgatggatggatcactttcggttataaaggggtggataaaattgttacatcaaatg
gtgttgaagcttccagaagtgtcaaaccttaaatcacttatggtcttgtgcaacgaagat
ggtgaagcagttttttttgacaatataagtgactcagtgatacgtaagagagttaaggca
ttgtcatggtttcaaaatgttgtcagtgtgaacaagctttcagagttcatcactgagaaa
gtgttcctgcgactctttttcaacatgttgtttgatgagaaagaagaaaaggcagaacat
atgaaaaatgcatgcatagagaccattgcttctgtagctggtcagatgggatggaaatca
tactatacattattgatcagatgtcttcgaggtgcatccagtaatccagataaacagaaa
ctctttatacgcctaatttgctgtattttggataaatttcacttttatgataaacaaccg
aaggaacctttggatgtggtttctgacatggagatgagggatactgatgtgaacaaagag
atacaggcatgcctatataaaattgtgcttccaaatatacaaaagttactggattctgaa
tctgaaaaggtcaatgtaaatatcagtcttgctgcactgaagcttcttaaattacttcct
ggagatgtgatggacttgtatcttccaacaattgttcatcggatatcaaacttcttgaag
aggcatctagaaagcatccgtgatgaagctaggtctgcattggccacttgtttgaaagaa
cttggattggaatacttgcagttcattgtcaaggttttgcaatctaccttgaagcgagga
tatgaacttcatgtcttaggatacacacttaattttattttgtccaagtgtctttcaact
ccagttgttggaaagatagattactgtttgaaggatctgctttctgtaatagagaatgac
attcttggagatgttgccgatcaaaaagaggtggaaaagatagcttcaaaaatgaaagaa
acacggaagaaaaagtcatttgaaagcttgaaattggtggcccaaaatataacattcaaa
agctatgccctgaagcttcttgcaccagtgacttctcatttgcagaagcacatcacacca
aatgtaaaaggaaaattggaaaatatgttgagtcatatagctactggtattgaaagcaat
ccctctgtagatcagactgatctatttatcttcatttatggcattgttgaagatggatta
aaagacgaaattagttggcatgaaaataagttattgctattggaagataaagatagccgt
gttaaaacaaaaagaatttctaaaggccctgttgttgctaagggcttgttgtgttcacac
cttattacagtgtttggtgtcagaatatttcataaacgtatgaagagtttgaaacaggat
gtaaaagatgaaaatactttatccttattagatccttttgtcaagcttttatgtgatggc
ttgtcctcgaagtatgaagatatcctgtcaacttcccttgaatgccttgctatacttgta
aggttgcctttaccatcccttcaacaacatgccgggagattaaaggcttctctgttggat
attgcccagggttcagtcaggtctagcagttctttaatgcagtcatgtttgaagttgctg
tctgtgcttttgaggaacactaaaatttctctcacttcagatcaaataaattcattaatt
caccttcctatatttctcgatattgaaaaaaatccatcattggtagccctatcacttcta
aagggtattgtcagccgcaagctggtggtgcctgaaatatatgatgttgttactagggtt
gctgaattgatggtgacaagtcaaattgaaccaatccgcaaaagatgcagtaaaattctg
ttgcaatttctgcttgattatagactttcagagaaacgcttgcaacaacatatggatttc
ctgctcttaaatttgagttatgagcattcaactggacgggaatctattcttgaaatgatt
catactattattgtcaaatttccaacaagtgttttggatgaacaatcttattcaatattt
gtccgtttggtattgtgcttagccaatgataatgattatattgttcgtgctatggctgga
aatgctataaagaagcttgttagttctgtcagtcctaattcacttaattctattcttgat
tatgttctttgttggtatttgggaggcaagcaacaactatgcggtgcagctgcccaggtt
ctggcgctgctaattgaagtgaaaaagaaaggctttcgtgaacatataaattctatcttg
cctgtgactagacacatctttaggtctgccatagatgcagttaccaactggcaagagggc
ttttcaaccgagtctgtcattcctctatggaatgaggcttactattctcttgttatgttt
gaaaagatgatcaaccaattcggtgatttatgctttgcagagtatcttgaggatatatgg
gaagcaatatgtgaaatgctgttgcacccacattcatggatacgaagcatatcagttcgc
ctcatagccctctacttttcgcatgtaacagatgctagcagagaaaatcatggaacctcg
ttaaggagttattttattatgagtccaagtagactatttctaatagctacttctctttgc
tgccatttaaaaatgccggtcataaatgattctgacagcagcctgatgacccagattatc
atctttgctatctgtggtgtccattctttgatggggcaaagtgcatgtatagatccccct
gctttctggtctactctttcgcaacaagaaaaggatcgatttcttaaagcatttgactta
cttgattcaagaaaaggaagaagcatgttcatgtcttcatctactgcttctatatttgaa
cacagcaatcagctgaatgttgacaatgctcaacgtgcattagtcacattattgctcagg
aaaatgggaaagattgcccttcaaatggatgctattcagatgggaatagtcttcaacagt
tttgggaatattatggcacagattagtcaggatgactgcctacactatgcacacgtgatc
ttgttacctctatacaaagtttgtgaaggatttgctggaaaagttgtaactgagaatgtc
aagaagttggcggaagacacgtgtaggaaactagagaatattttgggaactcacaacttt
gtgcaagtttacaaccttaccaggaagaaccttatgttgaaaagaaacaagaggagacaa
gaagaaaagcaaatggcagtgatcaatccgatgcgtaatgccaaacgaaagttgaaaatt
tctgccaagaatcgtgctaacaaaaagagaaagattatgacaatgaaagaaggaaagctc
atggcgatgcgtaatgccaaagggaattttagaatttctgctaacaaaaagagaaagaat
ttatag
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integrated database retrieval system
