Vigna unguiculata (cowpea): 114193294
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Entry
114193294 CDS
T06017
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114193294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114193294
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114193294
Spliceosome [BR:
vun03041
]
Complex C
Other components
Step II factors
114193294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
DEAD
OB_NTP_bind
IBR
AAA_22
AAA_19
zf-RING_UBOX
ResIII
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_4
Helicase_RecD
ABC_tran
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
114193294
NCBI-ProteinID:
XP_027938831
LinkDB
All DBs
Position
1:41029797..41036527
Genome browser
AA seq
1740 aa
AA seq
DB search
MKKSSYPNPSPTPHATHRRLDFHPNTPPHGGSTPRPITHRPFHQWRPRLHPHAARLHRPP
EPYFKVELRLGLRRPSRDDIVALIKECEHKPQSFTFYPVDDVAAALSYRNWEEACDAAAW
FWESLLLEKHDYTPEMDSNVSVTDSLDGRLRVLFTRHVMKVMEGKEVKRWVEESERLSKE
IERVSTLLGKHLHIDLSNHYIEQRKGLVVEKIQVERRLKEFDSAMDCILKYLAEDADVEG
ADVEGDRSVNVFKFDGCFDWKRIHCLIRRECRRLEDGLPIYAYRKDILREIHYQQMMVLI
GETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAAKSVAQRVQEESSGCYEGQSIKCST
FSSMNEFDSRIIFMTDHSLLQHYMSDNNLSGISCIIIDEAHERSLNTDLLMTLLKNLLYR
RGEMRLIIMSATADAKQLSDYFYGCGIFRVHGRSFPVDIKYAPSDHAGYSGSSAVASYVS
DVVRKATEVHRTEEEGTILAFLTSQIEVEYACEKFQVPSAVALPLHGKLSSEEQFRVFQN
YPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISQSSADQRA
GRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALGVKNIQDFDFVDAP
SSSSIDIAIRNLIQLRAIEMKNDVLELTPEGWCLVKLGIEPRLGKLILGCFKHGLGREGV
VLAAVMANASSIFCRVGSEFEKRRSDCLKVQFCHCDGDLFTLLSVYKEWEALPLERRNRW
CWENSINAKSVRRCQDTILELESCLEREHNLVIPSYWLWDPCTPSSYDKNLKRVILSSLA
ENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSTF
DFQSLYDLCPAPLFDVSKMVERKLQMKTLCGLGCILLKRFCGKANCNLFALVSRIRKACV
DERIYIEVNVDQNAIHLFATSNDMDTALALVHDAVEYERKLLRAECMDKFLYHGSGIPSP
IALFGSGAEIKHLELEKRSLSIEVCHANINAIDDKELLMFLEKNTSGSICAVHKFAGNVK
DEDKEKWGRIIFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSFPAVKAKVYWPR
RLSRGFAIVKCDIKDVNHMLRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEIL
DVLRTATSRRILDFFLVRGDAVENPPCSVLEKALLKEIYPSLPKKDPHISSCRVQVFVPE
PKDTFMRALISFDGRLHLEAAKALEDIEGKVLDGCLSWQKIKCQRLFHSSLIFPTPVFRV
IREQLDGVLANFRNLRGLECNLDRTVNGSHRVKITANATRTVAEVRRPLEELWRGKTIEH
DSLTPAVLQLMMSKDGFNLKNSLQQETGTYILFDRHNLNLRVFGSPDKVALAHDKVIQSL
LSLHEEKQLEIHLRGRDLPPDLMKQLIKKFGPDLHGLKERVPGVDLKLNISRHVISLNGR
KELKTRVEEIIFEIARSSHHLVGTFDNDGPNCPICLCEVEDPFRLEGCGHLFCRSCLVEQ
CESAIKNQDSFPIRCSHKDCGDLILLTDLRSLLFSDKLEDLFRASLGDFVAKSGGTYRFC
PSPDCPSIYRVADPETAGEPFVCGSCYSEICSRCHLEYHAFFSCERYKEFKEEDRSVIDW
SRGKDDVKSCLACGLVIQKVDGCNHVLCMCGKHVCWVCLEFFGGSDECYSHLRNVHTTII
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatcttcttaccctaacccctccccgacgccccacgccactcatcgccgcctt
gattttcaccctaacacaccaccacacggcggttccactccccgccccatcacccaccgc
cccttccaccaatggaggccgcgcttacacccacatgcggcacgcctccaccgtccgccg
gagccttatttcaaggtggagctccgcctcggcctccgccgtcccagccgcgacgacatc
gtggccctgatcaaagaatgcgagcacaaaccgcagtcttttaccttttaccccgtcgac
gacgtcgctgccgcgctcagttaccggaattgggaggaggcgtgcgacgcagccgcttgg
ttctgggagtcgctgctgttggagaagcacgattacacgccggagatggactccaacgtt
tcggtgacggacagtctggatggtcgccttcgagtgttgttcacgaggcacgtgatgaag
gtgatggaggggaaggaggttaagcggtgggtggaggagagtgaacggttgtcaaaggaa
attgagagggtttcaactttgctgggtaagcacttgcatattgacttgagtaaccactat
attgagcagaggaaagggctcgttgttgagaaaatccaggttgaaaggaggttgaaggag
ttcgactctgcgatggattgtatactgaagtatctggcggaggacgctgacgtggagggt
gccgacgtggagggtgatcggagtgtgaatgtgttcaagtttgatggatgttttgattgg
aagcgcattcactgtctgatcagaagggagtgtcggagactggaggatggattgcccatt
tatgcttaccggaaggatattcttcgggaaatacattatcagcagatgatggtattaatt
ggagagactggttctggaaagagtacacagttagttcagtttcttgctgattctggcatt
ggtgccgatgaatccattgtatgcacacaacctcgcaagattgctgccaaatcagtggct
caacgggtccaggaagaaagcagtggatgttacgaagggcagtcaatcaaatgttctacg
ttttcatccatgaatgagtttgattccaggataatattcatgacagatcactctttattg
cagcactacatgagtgataataatttgtctgggatctcgtgcatcataattgatgaggct
cacgagaggagcttaaatacagatttactgatgactttgttgaagaatttactttatagg
aggggtgagatgcggcttatcattatgtctgctacagctgatgcaaaacagctatcggat
tacttttatggttgtggaatttttcgtgtgcatgggagaagttttccagtggatatcaaa
tatgctccttctgaccatgctgggtattctggttcttctgctgttgcctcgtatgtttct
gatgttgtcagaaaggcaaccgaggttcatagaacagaggaagagggaactatccttgcc
tttttgacatctcagatagaagtagaatatgcctgtgagaagtttcaggtaccctctgca
gttgccctgcccttacatggaaaactttcatctgaagagcaatttcgtgtttttcagaac
taccctggaaagagaaaagtgatattttcaacaaatcttgctgagacctcactgacaatt
cctggtgttaagtatgtgattgattctggtttagttaaagactgcagatatgatcctggc
agtgggatgaatgtacttaaggtttgctggattagtcagagctctgctgatcaacgggct
ggtcgtgctgggaggactgagcctggtgtgtgctataggctgtattcagaaactgattat
caatcaatggacctaaatcaagagccagagattcggcgagttcatcttggtgtagcagtt
ttgaggatcctggctctaggagtgaagaatattcaggattttgattttgtggatgctccc
agttctagctctattgatatagcaatcaggaatctaattcagttacgagcaattgagatg
aaaaatgatgttcttgaattaacgccagagggttggtgcctggtaaaattgggaattgaa
cccaggcttggtaaacttattcttggctgtttcaaacatggtttgggtagggaaggtgtt
gttctggctgctgtgatggccaatgctagtagcatattttgcagagttggcagtgaattt
gaaaagcgaagatccgattgtcttaaagtgcaattttgccattgtgatggtgacctcttt
actcttctctccgtgtacaaggaatgggaagctttgcctttggaaaggaggaacaggtgg
tgttgggaaaacagcatcaatgctaagtccgtgaggaggtgccaagacacaattttggag
ttagaaagttgccttgagcgtgaacataacctcgttattcctagttattggctttgggac
ccttgtacaccctctagttatgataagaatttgaagagggttatactgtcctcacttgct
gagaatgtagccatgtactctggctgtaatcaacttggttatgaagtggcccaaactggg
caacatgttcaactgcatccatcatgttcattgcttgtttttgctcagaaaccaagttgg
gtggtttttggtgagcttctttccatctctaatcaatatttggtctgcgtgagcacattt
gactttcaatcattatatgacctttgcccagctcccttgtttgatgtatctaaaatggtg
gagcggaaattgcaaatgaagacattgtgtggtcttggctgtattcttctcaagagattt
tgtggaaaagccaattgtaatttgtttgctcttgtttcacgtataaggaaagcttgtgtg
gatgaacgtatctacattgaagtgaatgttgaccagaatgcaatccacttatttgccact
tcaaatgatatggatacagcccttgcgttggttcatgacgctgtagaatatgagagaaag
ttgttacgcgctgaatgtatggataagtttttgtatcatgggtctggtattccgtcacct
atagctttgtttgggtctggtgctgagataaaacatttggaacttgagaaacgttccttg
agtattgaggtgtgtcatgcaaacataaatgcaattgatgacaaggagctcttaatgttt
ttagagaagaatacctctggtagcatctgtgctgtgcacaaatttgcaggcaatgtgaag
gatgaagataaagaaaagtggggcaggataatttttacgtcccctgaatttgtcaaaaga
gccactgaactagatggacatgagttttgtggctcctccttgaaaattttcccttcgcag
ttgggaggggataaaacattttcgttccctgctgttaaagcaaaagtttattggcctcgt
aggcttagcaggggatttgccatagttaaatgtgatataaaggatgtcaatcatatgttg
agagatttctacaaccttgcaatagggggaaggtatgttcgatgtgaagttggcaaaaag
agtatggacagtgttgtcataaatgggcttggcaaagatctctcggaagctgaaatactg
gatgtgctaagaactgctacaagcaggaggattttggattttttcttggtgagaggggat
gctgttgaaaacccaccatgcagtgttttggagaaggcactgttgaaggaaatttacccc
tctttgcccaaaaaggacccgcacattagttcttgccgagttcaggtgtttgtacctgag
cctaaggatacctttatgagagctttaatcagtttcgatggaagattgcatttagaggca
gcaaaagctttggaggatattgaaggaaaggtgttagatggatgtctatcatggcaaaag
ataaagtgccagcggttgtttcatagctccttgatatttcctacaccagtgtttcgtgtg
attagggaacaactggatggagtacttgcaaacttcaggaatttaagaggtcttgaatgc
aacctggacaggacagttaatggttcccaccgagtcaagataactgcgaacgccacaagg
acagtggcagaagttagaagacctctggaagaactatggagagggaaaaccattgagcat
gacagtctcactcctgcagttctccagctcatgatgtccaaggatgggtttaatcttaaa
aactcattgcagcaggagacaggaacttatattctttttgacaggcacaacttgaattta
cgtgtgtttggttccccagacaaggttgctttggctcatgacaaggtgattcaatccctc
ctctctctccatgaagaaaagcagttagaaatccatctgagagggagggatttacctcct
gatttaatgaagcaattgattaaaaagtttggaccagatctgcatggactgaaagaaagg
gtacctggggtagatcttaagctcaacataagtcgccatgtaatcagtcttaatggtagg
aaggagttgaaaaccagggtagaggaaataatatttgagattgctcgttcaagccatcat
ttggttgggacgtttgataatgatggtcctaattgcccgatttgcttgtgcgaggttgag
gatccattccggcttgaaggctgtggtcatttgttctgccggtcgtgtctggtggaacaa
tgtgaatctgctattaaaaaccaagacagcttcccaatacgttgtagtcacaaggactgt
ggagatctcatcctgcttacagatcttagatctctcttatttagcgataagttggaggat
cttttcagggcttcattgggagattttgttgctaagagtgggggaacttacaggttttgc
ccttctccagactgcccctcaatttatcgagttgcagatcctgagactgctggtgagcca
tttgtttgtgggtcttgttattcagagatatgtagcaggtgccacttagagtatcatgct
ttcttttcatgcgagagatataaagagtttaaggaagaagatcgatctgtgatagattgg
tccagaggcaaggacgatgttaagagttgcttggcgtgtgggcttgtaattcagaaggtg
gatgggtgcaaccatgttctgtgcatgtgtggaaagcatgtgtgttgggtttgcttagag
ttcttcggtggtagtgatgaatgttatagccatttgagaaatgtgcacacgactataata
taa
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