Vigna unguiculata (cowpea): 114194344
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Entry
114194344 CDS
T06017
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114194344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114194344
Enzymes [BR:
vun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114194344
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114194344
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
114194344
NCBI-ProteinID:
XP_027940306
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All DBs
Position
8:15360386..15373892
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AA seq
620 aa
AA seq
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MASVFQLQRRFLCTSSSKWRVKQVTASIFEETLQELKTHISSSDYVAVSMEXTSSPSPPS
WLRPLPFDTAQTAYYKARRAAHRFQLLHFAVCPFSVSSSDKLLAHPYNFVLFPRDELKMG
MPAYSFSCQTSFLASMARRGFDFNACVYNGISYLSRAQESAAKVRLGTALSSLPVVKSSS
SPTVADTVFVERIRSRIKHWRKTCETHFFLXNSFYAEELINFLRNIVLGGEQFRSRPCMT
IDVCSERQVQLVLEMLLDHSDDLLPLLIPTKSGTIHAIRIVLVNSKEDKESLERELQNFE
EEERKKIHGFREVTDSISASLKPVICYNCLNDCTLIHSKFIAPLPPEVDEFVSSLRSVFP
NVLDINYLMRKHGTMRKMTNIPSAISYLNSNFFAPVDLEIPDQATVKEGKIHGLNALRLG
YLFMKLCSILKISPNVTDSGNKHLAPELSDFTNVFHPRSAPIQDLSNAGDVGVWTNNARK
ISCEHLVFLWGFNLGMTAGMLKSLLRSWHNIFSREFDVKLVDKSCAIVVFWQPGVSKQFL
DIMNSEEMSGDLKELLSEGLRVTSYETXDRICRLGLWEMDLMESLDRALESSYCDKESNC
ERKSSEIHWYNDNVINLDDL
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggtgtttcagttgcagcgtcgtttcctctgcacgtcctcctcgaaatggagg
gtgaagcaggtaacagcttccatcttcgaagagaccctgcaagagctaaagactcacatc
tcttcctccgactatgtagccgtatccatggagnngaccagctctccgtcgccgccgtcc
tggcttcgccctctacctttcgacaccgcccagaccgcctactacaaggcccgccgcgcc
gcccaccgcttccagctcctccactttgctgtgtgccccttctccgtctccagctccgac
aaactcctcgctcacccttataatttcgtgctgtttccgagagacgaattgaaaatgggg
atgcctgcttacagcttttcgtgccagacatcgtttctcgcctccatggctcgccggggc
tttgatttcaatgcttgcgtttataatggcatatcatatctatctagagctcaagagtca
gcagctaaagttcgtcttggaactgctctctcttctcttccagtggtgaaatcttcttca
tcacctactgttgcggacacagtttttgttgagaggattagatcacggattaaacattgg
agaaagacatgtgaaactcatttttttcttnnaaactcattttatgcagaagaacttatc
aacttccttaggaatattgtcctgggaggtgaacagttcagatcaagaccttgcatgacc
atagatgtatgcagtgaacgtcaagtgcagctagttcttgagatgttgttagaccactca
gatgatcttcttcctttgctgatccctacaaagagtgggaccatacatgcaatacgaatt
gttctggtaaattcaaaagaagataaggaatcattggagagagagcttcagaattttgaa
gaggaggaaagaaagaaaattcatggatttagagaggtaaccgattcaatttctgcttcc
ctgaaacctgttatctgctacaattgccttaatgattgtactctaatccattcaaaattc
attgcaccacttccaccagaggtagatgaatttgtgagctctttgcgctcagtttttccc
aatgtacttgacataaattacttgatgaggaaacatggaaccatgagaaaaatgaccaac
attccgagtgctatatcctacttgaatagtaatttctttgcacctgttgatttggaaatt
cctgaccaagctactgtaaaagaaggcaagattcatggacttaatgcattaagactaggc
tatttattcatgaagctatgctctatattgaaaatttccccaaatgtaactgattctggc
aataagcatttggctccagagctttcagacttcaccaatgtattccatccacggtcagct
ccaatccaagatttatctaatgccggggatgttggcgtgtggaccaataatgcaagaaaa
atcagttgtgaacatttggttttcttatggggattcaatcttggtatgactgctggcatg
ctaaagagtttacttcgttcatggcataatatcttttcaagagagtttgatgttaaattg
gtggacaagagttgtgccattgttgttttctggcaacctggagtatcaaaacaatttcta
gacataatgaatagtgaagaaatgagcggagacttaaaggaattgttgtcagaaggactg
agggtaaccagttatgagaccntcgacagaatatgcaggctaggtttgtgggagatggat
cttatggagtcacttgacagagccttggaaagttcttattgtgataaagagagtaattgt
gagagaaaatcctctgaaattcattggtataatgacaatgtaattaacttggatgatctt
taa
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