Vigna unguiculata (cowpea): 114194434
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Entry
114194434 CDS
T06017
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114194434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114194434
03012 Translation factors [BR:
vun03012
]
114194434
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114194434
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114194434
Translation factors [BR:
vun03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114194434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
OB_NTP_bind
HA2_C
Ank_2
HA2_N
nSTAND3
AAA_19
ATPase
AAA_23
AAA_14
AAA_22
Ank_5
Ank_3
ABC_tran
Rad17
AAA_7
PhoH
AAA_11
AAA_16
Sigma54_activat
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
114194434
NCBI-ProteinID:
XP_027940431
LinkDB
All DBs
Position
8:35750106..35759293
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AA seq
1153 aa
AA seq
DB search
MAKNREKKGEALHRQTPKVDEVTRIRISQILEQFRASKDEVYKFDAGLSNQERALVHQMS
QKMGFRSKSSGLGNDRRVSVQKIKKKSDTDNGFRNLPHFTFSEEAKWVLGDLFAHYPPGD
GDLWEMVGENSDSTAEKTKQKQDDIFSRPSMSKNEIAKRLEALSSRINKVPNLKQIIEDR
SKLPIASFKDAITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQPRR
ISATSVSERISAERGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGSRSSKI
GHMKDDISGITHIIMDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATIDAVRFSQYF
GGCPVISVPGFTYPVKTFYLEDVLSIVKSKNDNHLDSTTSSTSINTRELSEEEKLSMDEA
INLAWSNDEWDMLLELVSSEGTPELFNYQHSLTGITPLMVFAGKGRVGDMCMLLSCGADC
NLKAQDGMTALEIAERQKQPEAAEILKKHLNNDFSNSTEENKLLDKYLSTVNPELVDIVL
IEQLIRKICIDSTDGGILVFLPGWDEINRTREKLFASYFFKNSSKFMLISLHSMVPSMEQ
KKVFRRPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWISK
ASAKQREGRAGRCQPGICYHLYSRTRAASLPDFQIPEIRRIPIEELCLQVKLLDPNCKVE
EFLGKTLDPPVFESIRNAIIILQEIGAFSSDEKLTKLGEKLGSLPVHPSICRMLFFAILM
NCLDPALTLACASEYRDPFTLPMLPEEKKRATAAKSELASLYGGCGDQFAVLAAFECWNN
SKKMGLEARFCSQYFVSSSAMHMLSGMRRQLQTELIRNGFINEDASSYSVNAYDPGVLHA
VLVAGLYPMVGRFIPNKMGKRFIVETANGDKVRLHNHSTNFKLSFRKYLDHTLIVYDEIT
RGDVGMNIRNCTVVGQLPLLLLSTEIAVAPADENDDDEDDAGGSEDEVGSEDGMEVDAKS
SGGREDKLMSSPDNMVKVIMDRWLYFRSTAIDVAQLYCLRERLSAAILYKVTYPRNDLPP
IMAASMHAIACILSCDGCIGMPAISEGVDTLTTMVNAATLGKPGSRRFGKRPKGSLAELI
NYEGRQNSGPSKA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaacagagagaagaaaggagaggcacttcaccgccaaacccccaaagttgat
gaagtcaccaggattcgcatttcccagattctggaacagttccgagcttccaaagatgaa
gtgtacaagtttgatgctggtttgtccaaccaagagcgtgctttggtgcatcaaatgtcc
cagaaaatggggtttagatctaaaagttctgggcttgggaatgacaggagagtgtccgtt
cagaaaataaaaaagaagtctgacactgataatgggtttcgaaatcttcctcatttcaca
ttttctgaagaggcaaaatgggtgctgggggatttatttgcccattatcctcctggtgat
ggagacttgtgggagatggttggagaaaatagtgacagtactgctgaaaaaacaaaacag
aagcaggatgatattttcagcaggccttcgatgagcaaaaatgaaattgctaagagattg
gaagctctttcttctagaattaacaaagtccctaacttgaaacagatcattgaagataga
tctaagcttccaattgcatctttcaaggatgcaattacgtcaactgttgaatctcaccag
gtagttctcatatctggtgaaactggttgtggaaagactacgcaggttccacagtttatt
ttggatcatatgtggggtaagggagaggtatgtaaaatagtttgtactcagcctcggcga
atctctgcaacttcagtttctgagagaatctccgctgagagaggagagactattggagaa
aatgtgggatataagattcggttagaaagcagagggggaagacaatcatcaattgtgcta
tgtaccactggagtgctactaagggtgttggtttccaaaggttcccgttcgtctaagata
gggcacatgaaggatgacatttctggaatcactcacataattatggatgaaattcatgaa
agggatcgatactctgacttcatgttggcaatcatcagagacatgctcccttcatatcct
cacctacgtctgatattaatgagtgccaccattgatgctgtgagattttctcaatatttt
gggggctgcccagtcatcagtgttccgggattcacttatccggtcaaaactttctatttg
gaggatgtactttctattgtaaaatctaagaatgataatcatcttgatagtactacatct
agtacttcaataaacaccagggagctaagtgaagaagagaagctttctatggatgaagct
attaatttggcttggtctaatgatgaatgggacatgctgttagagttggtttcttctgaa
ggaactccggaactctttaattaccaacattctttaactggcattactccactaatggtg
tttgctgggaagggtagagtgggtgatatgtgcatgctcttatcttgtggggcagattgc
aatttaaaggcccaggatggaatgactgcactggagattgctgaaaggcaaaagcaacca
gaagcagctgaaatattgaagaagcacttaaacaatgatttttccaactccacagaagag
aataagctacttgataaatacctgtcaacagtcaacccagaacttgttgatattgttttg
atagagcagctgataagaaaaatatgcattgattccacagatggagggatccttgttttt
cttccaggctgggatgaaataaatagaacacgtgagaaattgtttgcatcatattttttc
aagaattcctcaaagtttatgctcatatctctacattcaatggttccaagcatggaacaa
aagaaggtttttaggcgcccacctcatggttgccgcaaaattgtactatcaacaaatatt
gctgaaactgctatcaccattgatgatattgtgtatgtcatagacaccggacgaatgaag
gaaaaaagttatgatccttataacaatgtctcaactcttcagtcatcttggatttcaaaa
gcaagtgctaagcagcgagagggacgtgctggccgctgtcaacctggaatatgttatcat
ctatactcaaggactcgagcagcttccttaccagattttcagattccagaaattaggaga
atacctattgaggagctttgtttgcaggtgaagttgctagatccaaattgcaaagtagaa
gaatttctgggcaagacgcttgatcctccagtttttgagtccatacgcaacgctattata
attcttcaagagattggggcattttcaagtgatgaaaaactcaccaaactaggggagaag
cttggttctcttcctgttcacccatcaatctgcaggatgcttttttttgctatattgatg
aactgtcttgatccagctttaactcttgcctgtgcatccgagtacagagatccatttaca
cttccaatgttacccgaagagaaaaagagagccacagctgcaaaatctgagcttgcttct
ttgtatgggggttgcggtgatcagtttgctgtattggctgcattcgaatgctggaataac
tcaaaaaaaatgggtctagaagcacggttttgttctcagtattttgtgtcttcaagtgcc
atgcacatgttatctggcatgcgcaggcaacttcaaacggaactaattcgaaatgggttt
atcaatgaagatgcttcaagttacagtgtgaatgcatatgaccctggtgtgctccatgct
gttttggtagctggactatatccaatggttgggagatttataccaaataaaatggggaaa
aggtttatagttgaaacagcaaatggtgataaagttcggttgcacaatcattctacaaat
ttcaagttgtcattcaggaaatatttagatcacactttgattgtgtacgatgagattact
cgtggtgatgtgggtatgaacataaggaactgcacagttgttggacaacttccacttttg
ctgctttcaacagagattgctgttgctccggccgacgaaaatgacgacgacgaggatgat
gccggagggagtgaagatgaagttggaagtgaagatgggatggaagttgatgctaaatct
agtggaggccgtgaggataagttgatgtcttctcctgataacatggttaaagtaatcatg
gaccgttggctttattttcgttcaacagccatcgatgttgctcagctatactgcttgaga
gagagattatcagcagcaattttatacaaagtgacatatccaaggaatgatcttcctcct
atcatggcggcttctatgcatgctatagcttgtattttgtcttgtgatggttgcattggt
atgccagcaatttcagaaggtgtggacacactaaccactatggtaaatgcagcaacttta
ggcaaaccaggatctaggcgatttggtaagagaccaaaaggatcacttgcagagcttatt
aattatgagggtcgccaaaactctgggccttctaaagcctag
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