Vigna unguiculata (cowpea): 114194750
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Entry
114194750 CDS
T06017
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114194750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114194750
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114194750
Spliceosome [BR:
vun03041
]
Complex C
Other components
Step II factors
114194750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
Cas3-like_C_2
Sigma54_activ_2
TsaE
GIPC1_GH2
ABC_tran
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
114194750
NCBI-ProteinID:
XP_027940942
LinkDB
All DBs
Position
8:complement(796438..803416)
Genome browser
AA seq
1199 aa
AA seq
DB search
MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKESANGKTKFKALAIADDRDRAKELRKEI
ESEAREKQSKQIEEDDGYRDRDRRDRRRDRYDEDDRRDHRRRGRDRDDEDDRRDYSRRGR
DRDDEDDRRDYSRRGRDRNDKDRDRDGDRHERRRRDDYEENGRGRENGDRDGNRKGTLHV
SGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHASQIATRRITNAKDIIKRDKEVY
VKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQGSRDGPVTRTGLSGIRI
VEEDDVGSSRRPLKRMSSPEKWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEGAEEELE
IELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTML
DSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQ
EQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPR
RVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDDNLSQY
SVIMLDEAHERTIHTDVLFGLLKQLVRRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPG
RTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKG
LGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGF
AKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPE
IQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRK
MAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPE
GDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKN
FTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK
EYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataatcctgaggatggattgaagaagttggaatacttgtctcttgtgtcg
aaggtttgcaccgagttggagtcccatacgggcaccggcgacaaagttctggcggagttc
atcactgagttgggtcgatcgtcggagaatgttgaggaatttgatgcgaaattgaaggag
aatggtgcggaaatgccggattactttgtccgaacgctcctcactattattcacgcgatt
ctccctcccaagccgaaggatttgaaaaaggagaaagagagtgccaatggcaagaccaag
ttcaaggctctggccatcgcagacgacagggaccgggccaaggagcttcggaaggagata
gaatctgaggcaagggagaagcagagtaagcaaattgaggaagatgatggatacagagac
agagatagaagagataggcgcagagataggtatgatgaagatgatagaagagatcatcgc
agaagaggaagagacagagatgatgaagatgatagaagggattacagcagaagaggtaga
gatagagatgatgaagatgatagaagggattacagcagaagaggaagagatagaaatgat
aaggatagagatagagatggtgacaggcatgagaggcgcaggagagatgattatgaagag
aatggtcgtggaagggagaatggagatagagatggtaataggaagggtacactgcatgtt
tctggtgaacccgaattatatgccgtttacaaagggagggtgtccagggtaatggaaact
gggtgctttgtccagttagaagacataagagggaaggaggggttggtccatgcgtcacag
atagccactcggaggatcacaaatgccaaagacattattaagcgcgacaaggaggtttat
gtaaaggtgatatcagtttccggtcagaagttgtctctttccatgagggacgttgatcag
cacacaggtaaggatctccttccgttgaagaagagctccgaggacgatgccttgaggatg
aatccgcagggttcaagggatgggccggttaccaggacaggtctttcaggtatcaggatt
gtagaagaagatgatgttggttcttcacggagacctctgaagagaatgagctcaccggag
aaatgggaagcaaaacagttgattgcttcaggtgtgatgagtgtttcagagtatccaact
tatgacgaagagggagatgggttgctgtaccaagaggaaggagctgaggaggagcttgag
attgagttgaatgaggatgaacccgcattcttgcaagggcagagcagatactcaatggat
atgtctcctgttaagatttttaagaatcccgaaggttctctgggtcgagctgctgcactc
cagtctgcacttataaaggagcgtagggaagtacgagaacaacaacaacggacaatgctt
gattcaattcccaaggatctcaatcggccttgggaagaccctatgccagagtcaggtgaa
aggcatcttgcccaggagcttaggggtgttggtttatcagcctatgatatgccagaatgg
aagaaggatgcatatggaaaaacaattacctttgggcaaaggtcaaagctttctattcaa
gagcagaggcagagtttgccaatttacaagttaaaaaaagaattgattcaggctgtgcat
gataatcaggtgttggttgttattggagaaactggttcaggtaagactactcaggtcaca
cagtatcttgccgaagcaggttataccacaagaggaaaaattggatgtactcaacctcgt
agggtggctgcaatgtcagttgcaaagagagtagcagaagagtttggttgtagattggga
gaagaagttggttatgccattcggtttgaggattgcactggaccagatactgttatcaag
tacatgacagatggtatgcttcttagggaaatattggtcgatgacaatctgtcacagtat
tctgttataatgcttgacgaagcccatgaaagaactattcatactgatgttctttttgga
ctgctcaagcagctagtgaggcgaagacctgaattgcgattgattgtcacttctgctact
ctggacgctgagaaattttcaggatatttctttaactgtaacatctttacaattcccggt
agaacttttcctgtagagatactttataccaaacagccggaaagtgattatttagatgca
tctttaataactgtcctacagatacacttgacagagcctgagggagacattcttctcttt
ttgaccgggcaagaggagattgattttgcttgccaatctctatatgagagaatgaaggga
ttaggtaagaatgttccagagctgatcattttaccggtttatagtgcccttcctagtgaa
atgcagtctaggatatttgaacctgctcctccagggaaaaggaaagtggttgtggctact
aacattgctgaggcttctttgactattgatgggatattttatgtaattgatcctggattt
gctaagcaaaatgtttataacccaaagcaaggtcttgattctttggtaataactccaatt
tcacaagcatcagccaaacaaagagctggacgtgcaggacgtactggacctgggaagtgt
tatcgcctttatactgagagtgcatataggaatgagatgtctcccactacaattcctgag
attcaaaggataaatctggggatgactacacttaatatgaaagcaatggggataaatgat
ctactgtcctttgattttatggatccaccatcacctcaagcactgatttctgccatggag
cagctttacagtcttggagcattagatgaagagggccttttgaccaaattggggaggaaa
atggcagaatttcctttggatccacctttgtccaagatgttgcttgccagcgttgacctt
ggatgcagtgatgagattttgaccataattgccatgatccagaccggtaatattttttac
aggccaagggaaaagcaagcccaagcagatcagaagagggcaaagtttttccagccagag
ggtgatcatctgacactacttgctgtttatgaggcttggaaagcgaagaatttttctggg
ccctggtgttttgagaattttgtgcaatctagatcgttgagaagagcacaggatgtcagg
aaacaacttctcaccattatggataagtacaaattggatgttgtaagtgctggaaaaaac
ttcaccaaagtaaggaaggctatcactgctggattcttttttcacgctgccagaaaggat
ccccaggaaggatacagaactctagttgagaaccaacctgtgtatatccatccaagttct
gctttgttccagaggcagccagactgggttatataccatgagcttgtgatgacaactaag
gagtatatgcgtgaggtcactgtcatagaccccaaatggcttgttgaactggctccaaga
tttttcaaagtagcagatcctacaaagatgagcaagcggaagcgtcaagagcgaattgaa
ccactttatgatagatatcacgagccaaattcatggcgtttgagtaaacgtcgtgcatga
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