Vigna unguiculata (cowpea): 114195318
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Entry
114195318 CDS
T06017
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
114195318
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
114195318
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vun02000
]
114195318
Transporters [BR:
vun02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
114195318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
Motif
Other DBs
NCBI-GeneID:
114195318
NCBI-ProteinID:
XP_027941539
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Position
8:complement(38135735..38164781)
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AA seq
1270 aa
AA seq
DB search
MDIIFSVAFLLQVFLLSSPSLSAASQHETYRAKHSEEYCAMYDICGQRSDGKALNCPYGS
PSVKPDDLLSAKIQSLCPTITGNVCCTADQFDTLRVQVQQAVPILVGCPSCLRNFLNLFC
ELSCSPNQSLFINVTSILEVNGNMTVDGIDFYVTETFGEGLYESCKDVKFGTMNTRAIDF
VGAGASNFEEWFEFLGQKVPPGFPGSPYSILFKTATFDPSPMKPMNASVYSCNDTSLGCS
CGDCPSSSVCADPEPSPPSKDPCTIRIGSLKVRCVDFSLAILYIVLVFVLFGWALLQRRR
GRGRPESSVEPLLNDRVDEGSSFSHLPKDGNHHAEEQQIDPQGQNVVQFSFVQGCLSSFY
RTYGRWAAKKPTIVLCSSLAIVVLLCLGLLRFEVETRPEKLWVGPGSKAAEEKDFFDSHL
APFYRIEQLILATIPESKHDKPPSIITEENIELLFQIQEKVDGILANYSGSLVSLSDICL
KPLGEDCATQSILQYFQMDPDNYDDYGGVEHAEYCFQHYTSTETCFSAFKAPLEPTVALG
GFSGNNYSEASAFVITYPVNNAIMKVGDENGKAIAWEKAFIQLAKEELLPLVQTSNLTLS
FSTESSIEEELKRESTADVVTILVSYIVMFAYISVTLGDTPHPSSFFLSSKVLLGLLGVL
LVVLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIIVDAVKRQPSNLPVEEKI
SHALGEVGPSITLASLSEILAFAVGSFVSMPACRVFSMIAALAVLLDFLLQITAFVALVT
LDFVRAKDNRIDCFPCIKLNRSSVEENEGNRQERDGLLTRYMKEVHAPFLGLRVVKILVI
AIFVGFTLASIALSTRIEPGLEQQIALPRDSYLQGYFSNISEYLRVGPPLYFVVKDYNYS
LESKHTNQLCSISHCDSNSLLNEISRASLVPKSSYIAKPAASWLDDFLVWMSPEAFSCCR
KFTNGSYCPPDDQPPCCLPDEGPCGLGGVCNDCTTCFRHSDLVNDRPSTAQFTEKLPWFL
DALPSADCAKGGHGAYTNSVDLNGYESGVIQASEFRTYHTPLNRQGDYVNAIQAARDFSA
RISASLKMDIFPYSVFYIFFEQYLEIWKLALINITIALGAIFVVCLVITSSLWSSAIVLL
VIVMIILDLMGVMAILGIQLNAVSVVNLIMAIGIAVEFCVHIVHAFTVSLGDRNQRAKTA
LCTMGASVFSGITLTKLVGVIVLCFSTSEIFVVYYFQMYLALVIIGFLHGLVFLPVVLSL
FGPPLRYTVI
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggatatcatcttctccgttgcttttctgttacaggtattcttgctatcttcgccttcg
ctctctgcagcgtcacagcatgaaacgtatagggctaaacattctgaagaatactgcgca
atgtatgatatatgcggtcaacgcagtgatgggaaggctctcaactgtccctatggttct
ccttcagtcaagcctgacgacctgctgtctgccaaaattcaaagtttgtgtcccactatt
acgggaaatgtttgctgtacggcggatcagtttgacacactaagagtccaagttcaacag
gcggtaccaattttagtgggctgtccatcatgcttgaggaatttcctaaatcttttttgt
gaactttcttgctctcctaatcagagtttattcatcaatgtgacttctattttagaggtt
aatggtaatatgactgtggatggcattgatttctatgtaactgaaacttttggcgaaggt
ctatatgagtcatgtaaggatgtaaagtttgggacaatgaatacaagggccatagatttt
gttggagctggagctagcaattttgaagagtggtttgaatttcttggtcagaaagttcct
cctggatttcctggttctccttattctatactttttaagacagccacttttgatccatct
ccaatgaaacctatgaatgcatctgtatattcatgtaatgacacttcactgggttgctct
tgtggtgattgtccttcttcatctgtttgcgcggatcctgaaccttctccacccagcaaa
gatccctgcaccattagaattgggtctttaaaggtcaggtgtgtggatttttcattggcc
atcttgtacattgtattggtttttgtgttgtttgggtgggcattactgcagaggagaaga
ggaagggggagacctgaatctagcgtggaaccgttgttgaatgacagggttgatgaaggg
agtagtttttctcacctcccaaaggatggaaatcatcacgcagaggagcaacagatagat
cctcaagggcagaatgtggtgcaattttcttttgttcaaggatgcctatctagcttttac
aggacatatggaagatgggctgctaaaaaacccacaattgtgctttgttcctctttggca
attgttgttttgctttgtttgggtctgcttcgttttgaggtggagacccggcctgagaag
ttatgggttggtcctgggagtaaggcagctgaagagaaagacttttttgatagtcatctt
gctccattctatcgaattgaacagctcatattagcaacaatcccagaatccaagcatgac
aagcctccaagtatcataacagaagaaaatattgaattgctttttcaaatacaggaaaag
gttgatggaattctagcaaattattctggttcgttggtatctctgagtgacatttgcttg
aagcctttaggcgaagattgtgccactcaaagtattttgcagtattttcaaatggaccct
gacaattatgacgactatggaggtgttgaacatgctgagtactgttttcagcattacact
tctacagaaacatgctttagtgcatttaaggctcctcttgagccaactgtggccttggga
gggttttccgggaacaattattctgaggcttctgcatttgttatcacgtaccctgtgaat
aatgcaattatgaaagttggagatgagaatgggaaggcaatagcttgggaaaaagctttc
atccaattagctaaggaggaattgctgccattggtgcaaactagcaatcttaccttgtca
ttttcgactgaaagttcaattgaggaagaattaaagagagaaagcactgcagatgtagta
acaatacttgtgagctatattgtgatgtttgcttatatatcggtgaccttgggagataca
cctcatccatcttctttcttcctctcatctaaggtattgcttggtcttttgggggttttg
cttgttgtgctttctgtcctcggatcagttggatttttcagtgctattggagtaaaatca
acactaatcataatggaagttataccttttctggtgttagcagttggtgttgataacatg
tgtataatcgtagatgctgtgaagcgacaaccctcaaatttaccagttgaagaaaaaata
agccatgcattgggtgaagttggaccttcaataactctagcaagcttatcagagattttg
gcatttgctgtaggatcatttgtttctatgccagcatgccgtgttttctctatgattgca
gctttggcggttctactggacttccttctgcagattaccgcttttgtagctttggttaca
ttagactttgtgagagctaaggacaacagaattgactgttttccatgcataaagttgaat
cggtcctctgtggaggagaatgaaggcaacaggcaggaaagagatggattattgacgcgg
tatatgaaggaggttcatgcaccatttcttggactacgggtagttaaaatcttggtcata
gccatctttgttggattcaccttagcaagcattgcattaagcactaggattgaacctggt
cttgagcaacagattgctcttccacgagattcctatcttcagggttatttcagtaacata
tctgagtaccttagagttggaccaccattatattttgttgtaaaggattacaactacagt
ttggaatccaaacacacaaatcagctatgctccattagccactgtgattcaaattctctt
ttaaatgagatatctagagcttcattagtgccaaaatcaagctacatagccaaaccagct
gcatcgtggcttgatgatttccttgtatggatgtcacctgaagcttttagctgctgtcga
aaattcacaaatggctcttattgtccacctgatgatcagccaccttgctgtttgccagat
gaaggaccatgtgggttgggtggagtgtgcaatgactgcacaacgtgtttccgccactcg
gatttggttaatgatcgtccatctacggcacagttcacagagaagcttccctggtttctt
gatgcacttccatcagctgattgtgcaaagggtggtcatggagcatacaccaacagtgta
gatctgaatggttatgagagtggtgttattcaagcttctgagtttcgaacttatcataca
ccacttaatagacaaggtgactatgttaatgcaatacaagctgcaagggatttttcagca
agaatttctgcttctttaaagatggatatttttccgtactcagtgttttatatcttcttt
gaacaatacctggaaatatggaagctagccctgatcaacattaccatagcactaggtgct
atttttgttgtttgtttggtcatcacatccagcttgtggagttcagcaatcgtattactt
gttattgtcatgataattttggacctcatgggtgtaatggcaattttgggtatccaactc
aatgcagtgtctgttgtaaaccttattatggcaataggaattgctgttgaattttgtgtg
catatagtccatgcctttacggtaagcttgggagataggaaccaacgagcaaagacagca
ttgtgtaccatgggggcttctgtattcagtggaatcacacttacaaaattagtcggagtt
atcgtcctttgcttctctacatctgaaatttttgtggtgtattacttccagatgtacctg
gccttggttatcattggtttcttgcacggccttgtgtttctaccagtggtattgagcttg
tttggtcctccgttgagatatacagtcatttag
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