Vigna unguiculata (cowpea): 114195468
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Entry
114195468 CDS
T06017
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
114195468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vun03400
]
114195468
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
114195468
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Ortholog
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GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
114195468
NCBI-ProteinID:
XP_027941751
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Position
8:32088351..32095989
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AA seq
925 aa
AA seq
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MRRRSASQRKRQPSTSEDQTGAQQNSEDGNKFQSPSDNGALTEISREAVGKLLRRANKVG
TSRRKKTAEFEPEQNGTQVLDPMLQPKTSEVGHCSRNPSGNASAGEKCSSSGEDHLDNKE
ELDDSDWEDGVVARDDHPVTIELNMTPNSTVKKQVRRASAEDKELAELVHKVHLLCLLAR
GRLIDNACDDPLIQASLLSLLPAHLLQLSNVEKLTSKDLYPLISWFHNNFHVKNSTSRET
SPCFGLASALELHEGSPEEIAALSVALLRALNLTARFVSVLNVSPLKPFQVASGSSCGIF
KTSTPMISKRKLDFKSPQEALSCSERENACESSLAHSQKSKKCRVTKHMDQSRDPPIVEV
RNDSAAKSKASETQDSNLESCLTDKSRKSKRKGDLEFDMQLEMALSATAVESEESKNKSA
ANPESSCFSCPSKRVKRVTVEESSTSSQVISTAIGSMKVGSPLYWAEVYCSEENLTGKWV
HVDAVNLIIDGEDKVEAMVAACKTSLRYVVAFAGQGAKDVTRRYCMKWYKIASHRVNSTW
WDPVLAPLRDLESGATGGVNDLRKSQIISKQSDTRDSFVPTRSSIEDIELETRAFTEPLP
TNQQAYKSHPLYAIEKWLTRYQVLHPKGPILGFCSGHPVYPRTCVQTVKTKERWLREGLQ
VKPNEYPVKELQRSIKPQKVQDSEADDYGCSDSMDKIKLYGKWQLEPLNLPHAVNGIVPR
NERGQVDVWSEKCLPPGTVHLRFPKAFSVAKRLEIDYAPAMVGFEFKNGRSYPVFDGIVV
CSEFKDVLLEAYAEEEERRQAEEKKRDETQALSRWYQLLSSIVTRQRLNNRYISNSLPSE
MPTSGQCMNNESITIVGESYDKNHNVRHQQQVEQCDTTSVVDASLSTPVKDHEHVFLKEF
ESFDSETSLLTKRCQCGFSVQVEEL
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgcagaagcgcttcccagcggaagagacaaccctcaacttcagaagatcaaact
ggagcccaacaaaactcagaagatggaaacaaatttcaatcacctagtgataatggagca
ctgaccgaaatatctcgagaggctgttggaaagcttctacgccgtgctaataaagttggc
acttcccggagaaaaaagactgctgagtttgagcctgaacaaaatggaacccaagtcttg
gatccaatgcttcaaccaaaaacttcagaggttggacattgtagtagaaatccctcggga
aatgcttctgctggggagaaatgtagtagttcgggtgaggaccacttggataacaaggaa
gagctggatgactccgattgggaagatggtgtagttgccagggatgatcatcctgtaacc
attgaattgaatatgacccctaattcaactgttaagaaacaagtccgacgagcttctgcc
gaggataaggagttggctgaacttgtacacaaggtccatttactctgtttactcgcacga
ggaagattaattgacaatgcttgtgatgatcctcttattcaggcttcgctgctttctcta
cttccagcacacttgctccagctatcaaatgttgaaaaactcacttcaaaagatctatat
cctttaatatcatggttccacaacaatttccatgttaaaaacagtacgagtcgagaaact
tcaccatgctttggtttggcatcagctttagaattacacgagggcagtcctgaagagatt
gcagcattatcagtggctctattaagagctttaaatcttacagccaggtttgtgtccgtt
ttgaatgtttctcctcttaaaccgtttcaagttgcaagcggatctagttgtgggatattt
aaaacttctacaccaatgatatctaagcgaaaattggattttaaatcacctcaagaagca
ttatcttgtagtgagagagagaatgcatgtgaaagttctcttgcccattctcagaaaagt
aagaaatgtcgtgtgacaaagcacatggatcagtctagagatcctcctattgttgaagtg
agaaatgatagtgctgcaaaatcgaaagcttctgagacgcaagatagtaacctggaatcg
tgtctcactgacaaatctcgtaagtcaaagaggaaaggagatcttgaatttgatatgcag
ttggaaatggctctttctgctacagccgttgaatctgaggagagtaaaaacaagtcagct
gcaaatcctgagtcttcgtgtttttcttgtccatccaaaagagtgaaaagggttaccgtt
gaagaatcatcaacctcctcccaagtaatttctacagcaattggatcaatgaaagtagga
tcccctctgtattgggcagaagtatattgcagtgaagaaaatttgacaggaaagtgggtg
catgttgatgctgtgaatttgattattgatggagaggacaaggttgaagccatggtggcg
gcatgcaaaacatctttgagatatgttgttgcctttgctgggcaaggggccaaagatgtg
acccgcaggtattgtatgaagtggtacaagatagcatcacatcgagtcaattcaacatgg
tgggatccggtgttggcaccattgagagacttggagtcgggagcaactggaggtgtgaat
gatttaagaaaaagccaaatcatttctaagcaatccgacacgagggattcttttgtccct
actaggagctctattgaggatattgagttggaaactagagcatttactgaacctcttcct
accaatcagcaggcctacaaaagtcacccactttatgccatagaaaaatggcttacaagg
tatcaagtacttcatccaaagggtccaatactgggattttgttcaggtcacccagtttat
cctaggacttgcgtgcaaacagttaagacaaaagagaggtggctgcgagaagggcttcaa
gttaaaccaaatgaatatcctgtgaaggagcttcaacgttccataaagcctcaaaaagta
caagattctgaagcggatgactatggctgcagtgattctatggacaaaatcaaactttat
gggaagtggcaactggaaccgttaaatttgcctcatgcggtgaatgggatagttcccagg
aatgaacgaggtcaagtagatgtttggtctgaaaaatgtcttccaccagggactgtacac
ttaaggtttccaaaggccttttctgttgccaagagactcgaaattgattatgcgcctgct
atggttggttttgaattcaaaaatggtcgttcatatcctgtctttgatggtattgtggtg
tgttccgagttcaaggatgtactgctagaggcttatgcagaggaagaagaaaggcgacaa
gcagaagaaaagaaaagggatgaaacacaggctcttagtcggtggtaccaacttctttcg
tctattgtaactcgtcaaaggttaaataatcgttatattagtaacagtttgccttcagag
atgccaactagtggccaatgtatgaacaatgagtcaattaccatagttggtgagagttat
gacaagaatcataacgtaagacaccaacaacaggtggagcaatgtgatactactagtgtt
gttgatgcatcattaagcactcctgtaaaagatcacgagcatgtgtttttgaaagagttt
gagagctttgacagcgaaacctctctattgacaaagcgatgtcagtgtggattttcggta
caagttgaagaattatag
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