Vigna unguiculata (cowpea): 114195616
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Entry
114195616 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03013
Nucleocytoplasmic transport
vun03015
mRNA surveillance pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114195616
09122 Translation
03013 Nucleocytoplasmic transport
114195616
03015 mRNA surveillance pathway
114195616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vun03019
]
114195616
03041 Spliceosome [BR:
vun03041
]
114195616
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114195616
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114195616
Spliceosome [BR:
vun03041
]
Complex C
Other components
EJC/TREX
114195616
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114195616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ribosomal_L26
Motif
Other DBs
NCBI-GeneID:
114195616
NCBI-ProteinID:
XP_027941944
LinkDB
All DBs
Position
8:6923135..6930445
Genome browser
AA seq
427 aa
AA seq
DB search
MGDTKTEAYEEDLLDYEDEEEKEPEGAANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICNEFERFSTYLSDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGL
ARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSR
AAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TASYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacaaagactgaagcgtacgaggaggaccttcttgactacgaagacgaagaa
gagaaggagcctgaaggtgctgctaataaagtcaacggtgaagctgtgaagaagggttat
gttggaattcacagttcaggattcagagactttttgctgaagccagagcttcttcgggct
atagtggactctggatttgagcacccttctgaagtgcaacatgagtgcatacctcaagct
atacttggaatggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtattt
gttctatcgaccctgcagcagattgaccctgttgcagggcaagtttctgcacttgtctta
tgtcatacaagggaattagcataccagatttgcaacgaatttgaaaggtttagcacctac
ctatccgatctgaaggttgctgtcttttatggtggcgtcaacattaaagttcacaaggat
ctattgaagaacgaatgccctagtattgttgttggtacacctggaagaatacttggatta
gctagggataaggacctttctttgaagaatgttagacatttcattttagatgaatgtgat
aagatgctagaatctctggacatgaggaaagatgtgcaagctattttcaagatgacaccc
catgataagcaagttatgatgttttctgcaacactcagcaaggaaatacgtcctgtctgc
aaaaaatttatgcaagatccaatggaaatttatgttgatgacgaagcaaagttgaccctt
catggacttgtgcagcactacatcaaattgaaagaagaggagaagaacaggaagttgaac
gaccttcttgatgcattggacttcaatcaaattgttatctttgtgaaaagtgttagtaga
gcagcggagctggacaaactgcttagagaatgcaacttcccatctatttgcattcattct
ggaatgtctcaggaagaaaggttaaagcgatataaaggttttaaggagggacatacaaga
attctagttgcaacagatttggttggtcggggaatcgatattgaacgtgtgaatatagtt
ataaactatgacatgccggattctgctgatacgtacttgcacagggttggccgtgctgga
agatttggaaccaagggccttgcaattacatttgtttcatgttccactgatgttgatgtt
ctcaacaatgttcaatccaggtttgaagttgatataaagcagcttcctgagcagattgat
acagctagctacatgccatcttag
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