Vigna unguiculata (cowpea): 114196073
Help
Entry
114196073 CDS
T06017
Name
(RefSeq) uncharacterized protein LOC114196073
KO
K06100
symplekin
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114196073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114196073
03019 Messenger RNA biogenesis [BR:
vun03019
]
114196073
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114196073
Messenger RNA biogenesis [BR:
vun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
114196073
U7-dependent histone pre-mRNA processing factors
114196073
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
114196073
NCBI-ProteinID:
XP_027942383
LinkDB
All DBs
Position
9:36086164..36112643
Genome browser
AA seq
1343 aa
AA seq
DB search
MAAPTRDQALSLLATANNHGDLAVKTSSLKQAKDLLLSIDHSLAADLFPYLLELQSSPES
LVRKLLIQIIEEIGFRAVEHTPTLISVLLTFLRDSDVIVVKQSIVSATNIFASVFEELIV
QFQQNGKVERWLEDTWMSMLKFKDAVFGIALEPGSVGIKLLALKFLEMFVLLFASDISDS
EKLATKGVRQAVNVLWLVGGHPHPVLDPVVLMSEGNRTLGILLNLLQSVGTLPGCLTITV
VNCLAAIARKRPQHYDTILLALLEFDPNVQTAKGCHIASIQYSLRTAFLGFLRCTYSPIL
ESRERLIRSLRAMNAGDAADQVLRQVDKMIKNGDRPTRDARVSKDEQPSTQSSVPGELSR
KRPVPLDNEQMTNGHETISKRIRSGPDSQSTLPAKINDSGQDPNSVNGVSPNVPLLDSEM
TAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLARIGNL
PATRQLNSQVSQSHVIATSVPINSVQSVSGTGQAVLPSTTATVLGSSSLPSETSNFSNLP
ADSKRDPRRDPRRLDPRRVVVAPGGATVSVTDDSGATKLEFDEPVSSIKPVSLPVVTADD
NTPSDLTVKIKNDDMISEGASVSAPDQVTPKTEVQERPGDIHRIAEADTSFGPSVSSADL
REEDPSLVNLSDDTETIGTDSSSISEFDQFSLDVQVEPTLEDTCLELPQLPPYVELSKEQ
RSMVKNMTVRHIINSYKHLHGTYCQQFWMPLLARLVAQIDDDDEFIMMLQKHILEDHWIK
GHELVLHVLYHLHSLMIFDSVENASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEV
PLLPESSLKILNDLCYSDVIGHDGKVIRDIERVTQGLGAIWSLILGRPQNRQACLGIALK
CAVHPQDEIRAKAIRLVTNKLFQLSYISGDVEKFATKMLLSAVEHEVSDTCLLQPGPTEH
RAEAEVEGHEISTSQVSESSISEDESARMAKPLIQNVPSISFSEAQRLISLFFALCTKKP
SLLQIVFNVYGQAPKTVKQAFHRHIPIVVRALGQSYSELLRIISDPPQGSENLLTLVLQI
LTQDTSPSSDLISTVKRLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRAL
AHILQGSAHTGPALTPVEVLVAMHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKA
LNQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTRQVWRMPKLWVGFLKCVYQ
TQPRSFHVLLQLPPQQLEGALNRHANLRGPLASYANQPTIKSTLSRSILAVLGLANETHV
QQHLSTSLHPSDTSSSVHGATLT
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctaccagggaccaagccctctctcttctcgctacggccaacaaccacgga
gaccttgccgttaaaacctcgtcgctcaaacaagcaaaggaccttcttctctccatcgac
cactctctcgccgccgacctcttcccttacttgcttgaacttcagtcttctcctgaaagc
ctcgttcgcaaattgctcattcagataatcgaggagattggttttagagcagttgagcac
actcctacgctgatatctgtactattaacatttttacgagacagtgatgtaattgttgta
aagcagtctattgttagtgccacaaatatcttcgctagtgtttttgaggagttgattgtg
cagtttcaacaaaatggtaaagttgagaggtggctagaagatacttggatgtcaatgctt
aagttcaaggatgctgtttttgggattgctctggagcctggttctgttggaataaagttg
ctggcactgaaattccttgaaatgtttgtattactatttgcatctgacatcagtgattct
gagaaattagccacaaaaggagttagacaagctgttaatgtcttgtggttggttggtggt
catcctcaccctgttcttgatccagtggtgctcatgtcagaaggaaataggactcttggc
attctattaaatttattgcagtctgttggcactcttcctggttgcttgactattactgtt
gtaaattgtttagcagccattgcaagaaaaaggccacagcactatgatactattctttta
gcattgcttgaatttgatccaaatgttcaaacagcgaagggatgtcacattgctagtatt
cagtactccttaagaacagcttttttgggatttcttaggtgcacttattcaccaatacta
gagtcaagagaaagactaataaggagcctgcgagctatgaatgcaggggatgctgcagat
caggtgcttcggcaagtcgacaaaatgattaaaaatggtgatcgtcccactcgtgatgca
cgagttagcaaggatgaacaaccatcaactcagtcatctgttccaggggaattatctaga
aaaagacctgttcctctagataatgaacaaatgaccaatggtcacgaaaccatatctaaa
cggattcgttctggtcctgattctcagtctactttaccagctaaaataaatgattctgga
caagatcctaactctgttaatggagtatcacctaatgttcctttactagatagtgaaatg
actgctgtagagcaaatgattgctgtgattggtgctttacttgctgaaggagagagaggt
gccgaatctcttgaaatcctcatttcaaagattcatcctgatctgctggctgatattgtc
ataactaatatgaagcatttgcctaagactcccccaccactggctaggattgggaattta
ccagcaacacggcaattaaactcccaagtcagtcaatcacatgttatagcaacttctgtt
ccaataaattctgtccaatccgtgtctggtactggccaagctgtgttgccttcaactacg
gcaactgtacttggctctagttcattgccatctgagacgtctaacttcagtaacctgcct
gctgattctaaacgtgatccacggcgggatccccgtcgccttgatccccgccgtgttgtg
gtagctcctggaggagctactgtatcagttacagatgatagtggggccacaaaattagag
tttgatgaacctgtttcttccattaaacctgtttcacttcctgttgttactgctgatgac
aatactccatcagatctaacagtcaaaataaaaaatgatgatatgatctctgaaggtgcc
tcagtttcagcacctgatcaggtgacccctaaaacagaggttcaggaaaggcctggagat
attcatcggattgcagaagcagatacttcctttggtccttcagtctcatccgctgattta
agagaggaggatccaagtttggtgaatctgtcagatgacactgaaacaattggtacagat
tcatcatctatttcagagtttgatcagttttctcttgatgttcaagttgaaccgacattg
gaagatacctgtctggagttaccacagcttccaccttatgttgaactatccaaagaacag
cgaagtatggtgaaaaacatgacggttaggcacataatcaattcatacaaacatttacat
ggaacgtattgtcagcagttttggatgccactacttgctcgactagttgctcagattgat
gatgacgatgagtttattatgatgcttcaaaaacacatcctggaagaccactggataaag
ggacatgaacttgtactgcatgttttgtaccatctgcactccctgatgatattcgattca
gttgaaaatgcttcatcttctgctgttttatatgaaaaatttctcttgggagtggccaaa
actttgttggactcttttccagcttcagataagtcttttagtagacttcttggtgaagtt
ccacttttgcctgaatcgtccttgaagattttgaatgatctctgctattctgacgttatt
ggtcatgatggaaaagttatccgcgacattgaacgtgtgactcaaggccttggtgctatc
tggagtttaattttggggcgtccacaaaatcgccaagcctgcttgggaatagcattgaag
tgtgctgtccatccacaggatgagattcgagctaaagctattcggctggttacaaacaag
ctctttcagcttagttacatatcaggagatgttgaaaagtttgcaacaaagatgctgctt
tctgctgtagaacatgaagtttcggatacatgtcttttgcaacctggacctactgaacat
agagccgaggcagaggttgaaggtcatgaaataagtacttcccaggtttcagagtcttca
atttctgaagatgaatctgctaggatggctaaaccattgattcaaaatgttccatctata
tcattttctgaagctcaacgtctcatttctttgttttttgcgttatgtactaagaaaccc
agtcttcttcagattgtatttaatgtgtatgggcaagccccgaaaactgttaaacaggct
tttcatcgccacattcctattgttgtaagggcactggggcaatcttattctgaactgctc
cgtatcatatctgatccacctcaaggaagtgaaaatcttctgacactggtactgcaaata
ttgactcaggacacgtcgccatcatctgatttaatatctactgttaaacgtttgtatgaa
acaaaatttagagatgttacaattcttgttccattattgtcttcactttccaaacaggag
gttttaccaatattcccaaggcttgttgatctcccattggaaaagtttcaaagagcactt
gctcacatactacagggttcagctcatacaggtccagctttaactcctgtagaagtgttg
gttgcaatgcatggaattgttccggagaaggatggccttgcacttaagaagataacagat
gcttgctcggcttgttttgagcaacgtactgtgttcacacaacaggttctggcaaaggca
ttgaaccagatggttgatcaaactccgctgcctctacttttcatgagaacagttattcag
gcaattgatgcttttcctgcactggttgattttgttatggagatactctcaaaacttgtg
acaagacaggtgtggcgtatgcctaaactttgggttggtttcttaaaatgtgtatatcag
acacagccacgttcttttcatgttctattgcagttgccaccccaacaacttgaaggtgca
ctcaacaggcatgctaatctcagaggtccccttgcttcatatgccaatcaaccaactata
aaatcaacacttagtagatcaattttagcagttcttggtcttgcaaatgaaactcatgtg
cagcaacatttgtcaacttcgttgcacccttctgacacaagttcttcagttcatggagca
actcttacgtga
DBGET
integrated database retrieval system
