Vespa velutina (Asian hornet): 124949788
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Entry
124949788 CDS
T09814
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vve
Vespa velutina (Asian hornet)
Pathway
vve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124949788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vve03019
]
124949788
03041 Spliceosome [BR:
vve03041
]
124949788
03009 Ribosome biogenesis [BR:
vve03009
]
124949788
03016 Transfer RNA biogenesis [BR:
vve03016
]
124949788
Enzymes [BR:
vve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124949788
Messenger RNA biogenesis [BR:
vve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124949788
Spliceosome [BR:
vve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124949788
Complex C
U4/U6.U5 tri-SnRNP related factors
124949788
Ribosome biogenesis [BR:
vve03009
]
Eukaryotic type
Pre-60S particles
Helicases
124949788
Transfer RNA biogenesis [BR:
vve03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124949788
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
EAK4_helical
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
124949788
NCBI-ProteinID:
XP_047351439
LinkDB
All DBs
Position
6:complement(3104035..3108365)
Genome browser
AA seq
1013 aa
AA seq
DB search
MAEFTNDLFDVFEEASDVEIIPRSVKEVNTIKVDSNNTSKRDLENDHEEQVTKKLKTDSL
LDDINIDELASRIKIHTIETIESCTHEVAVPPDQEYISLETKQTKPAKEYKFVLDPFQKE
AILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFYEEF
KDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVW
EETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQHYIFPVGGD
GIHLVVDETGQFKEENFNRAMACLQHGDAAKGDTKGRKGGLRVTNDGQTNIFKMVKMIME
RNFAPVIIFSFSKKDCEIYAMQMAQLDLNTLEEKKLVDEVFNNAMDVLSEEDRRLPQVEN
VLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRK
FDGKNFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVKPVVCKEIVQGKPDPINSAF
HLTYNMVLNLLRVEEINPEYMLERSFYQFQNQACIPNLYNKVKKLEVAYNEINIEKYNQI
STYHDIREQLDRLSTEFRSFLTKPEYLLPFLQPGRLIKVKSGNETFDWGIIVNFKKKNPK
NPIKEKSVLIIDILLHVSKKSSEGSLLPCRDGEEGDIEVVPVLHTLISQISSLRLYHPND
LRPTDNRKSVLKTIQEVKKRFPDGLPLLNPITDMHIEDQSFKDIVKRIEVLEERLYSHPL
HKDCNVNTLYEQFLHKEELGVQLKQAKTELKQAKSILQMDELKCRKRVLRRMAYCTAADV
IELKGRVACELNGTDELLMTEMIFNGLFNSLSIPQMVALISCFVCDDKSNEMPKSTEELS
GPLRQMQDLARRIAKVSTEANLDLDEDTYVERFKPYLMDVVYAWCKGATFLQICKMTDIF
EGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatttactaatgatttatttgatgtttttgaagaggcaagtgatgtggaaata
atacctagatcagtgaaagaagttaatacaataaaagttgattctaataatacatcgaaa
cgtgatcttgaaaatgatcatgaagaacaagtgacgaaaaaattaaaaacagactctctc
ttggacgatatcaatatagatgaattggcatcacgtattaaaattcatactatagaaaca
atagaatcatgtacacatgaagtagcagtaccaccggatcaagaatatatttcattagaa
actaaacaaaccaaaccagctaaggaatataaatttgttttggatccttttcaaaaggag
gcaattctatgtattgaaaataatcaatctgttcttgtttctgcacatacttcggcaggg
aaaactgttgttgcagagtatgcgatagcctgttctttaagagacaaacaaagagtaata
tatacaactcccataaaagctctgagtaatcagaaatacagagaattttatgaagaattt
aaggatgtaggattagtaacaggagatgttacaattaatccaacagctagtgttcttatt
atgacaacagaaattttaagaaatatgctttataggggttccgaggttatgcgagaagtt
ggttgggtaatatttgatgaaattcattatatgcgtgacaaagaaagaggcgtagtatgg
gaagaaactctaattcttttacctgataatgtacattatgtgtttctatctgctactata
cctaatgcacgtcagtttgttgagtgggttgctcatttacataaacaaccatgtcatgtt
gtttatactgactatcgaccaacaccgttacaacactatatatttccagttggtggagat
ggtattcatttggttgtagatgaaacaggacaattcaaagaggaaaatttcaatagagcc
atggcttgtcttcaacatggagatgctgctaaaggtgatacgaaaggtcgtaaaggtggc
cttcgagtaacaaatgacggacaaacaaatatttttaaaatggtaaagatgattatggaa
agaaattttgccccggttattatctttagtttctctaaaaaagattgtgaaatctatgca
atgcaaatggcacaattagatttaaatacattggaagaaaaaaaattagtagatgaagtt
ttcaacaatgctatggatgttttaagcgaagaagacagacgattaccacaagtcgagaac
gtacttcctcttttaagacgtggtattggtattcatcatggaggactcttgcctattcta
aaagaaactgtggaaattttatttggtgaaggattaattaaagcattatttgccacggaa
acttttgcaatgggattaaatatgcctgcaagaacagttttatttacagcgccacgtaaa
tttgatggcaaaaattttcgttggattacatctggagaatatatccaaatgtctggacgt
gctggtaggagaggcttggatgaaaaaggaatagttattttaatgatcgatgaacaagtt
aaaccggttgtctgtaaagaaattgtacagggaaaaccagatccaataaattctgcattc
catttaacatataatatggtgctcaatcttcttagagtagaagaaataaatccagaatat
atgttagaaagaagtttctatcaatttcaaaatcaagcttgtataccaaatttatacaat
aaagtaaaaaagctggaagttgcatataatgaaatcaatatagaaaagtataatcagata
tctacatatcacgatattcgcgagcaattagatcgattaagtactgaatttagatcattt
ttgacaaaaccagagtatttacttccatttttgcaacctggtagattgataaaggtaaaa
agtggaaatgaaacatttgattggggtattatagtaaatttcaaaaagaaaaatcccaaa
aatccaataaaggaaaagtccgttttgattattgatattttactccacgtatctaaaaaa
tcttctgaaggaagtctattaccttgtcgtgatggagaggaaggtgatatagaagttgtt
cctgttttacatacattaatttcccaaatcagttctcttagattatatcatccgaatgat
ttaaggcctactgataatagaaaaagtgtactgaaaaccattcaagaagtgaaaaaacgg
ttcccagatggactgccattattaaatcccataactgatatgcacattgaagatcagagt
tttaaagacattgttaaaagaattgaagttctagaagaaagactttactctcatcctttg
cacaaggattgtaatgtgaatacattatatgaacaatttttacataaagaagaattaggt
gtgcaactaaaacaagccaaaacagaactaaaacaggctaaatccatacttcaaatggat
gaattaaaatgtagaaaacgagtacttcgaaggatggcctattgtacagcagctgatgta
atagaattaaaaggcagagttgcttgtgaattaaatggaactgatgaattattaatgaca
gaaatgatttttaatggtttatttaattcattaagtataccacaaatggtagctttaatt
agttgttttgtgtgtgatgataaatctaatgaaatgcctaaaagtactgaagaattaagt
ggaccacttaggcaaatgcaagatttagctcgaaggatagccaaagtttcaactgaagct
aatttagacttagatgaagatacatacgtagaaagatttaaaccatacctgatggatgtt
gtatatgcttggtgtaaaggtgcaacctttttacagatatgtaaaatgacagatatattt
gaaggatcgataataagatgtatgcgtcgtttagaagaagttctaaggcaattatgtcaa
gctgcaaaaaatattggaaatacagatttagaaaataaatttagtgaagcaattaaactt
ataaaaagagacattgttttcgctgcatctttgtatttataa
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