KEGG   Vitis vinifera (wine grape): 100240869
Entry
100240869         CDS       T01084                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03022  Basal transcription factors
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100240869
  09124 Replication and repair
   03420 Nucleotide excision repair
    100240869
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100240869
   03036 Chromosome and associated proteins [BR:vvi03036]
    100240869
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100240869
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     100240869
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100240869
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100240869
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100240869
SSDB
Motif
Pfam: DEAD_2 Helicase_C_2 HBB ResIII DEAD NAMPT_N AAA_11 SNF2-rel_dom
Other DBs
NCBI-GeneID: 100240869
NCBI-ProteinID: XP_002277634
UniProt: F6HQ82
LinkDB
Position
7:join(1755450..1755983,1756139..1756419,1759225..1759307,1759410..1759813,1760236..1760429,1760609..1760789,1761090..1761214,1761933..1762022,1762198..1762276,1762395..1762471,1763151..1763259,1764085..1764204)
AA seq 758 aa
MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYA
LSKPSNPIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKNLCINPA
VVSAENRDSVDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDL
RAFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLSKMAQEINRFKATDAGRLRAEYNRLVEGLAQRGNLPI
SDTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLHGRLETENVEKEGPVAFVAS
INSQAGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRNCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFV
SYSYMDGIVNTWNESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGVSGRKTLLSEEDLEKMGDGTTNEMLF
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgaaattccaaatcgaagatgtgacggtgtacttcccctacgacaacatctaccctgag
cagtactcctacatggtggagctgaaacgtgctctagatgccaaaggccacgccctgctc
gaaatgcccaccggcaccggcaagaccatcgccctcctctccctcatcactagctatgcc
ctatccaaaccctccaaccccatcaagctcctttactgcacccgcaccgtccacgagatg
gagaaaaccctagccgagctccgtctcctccaccagtaccagctccgccacctcggcccc
gccgcaagaatcctcgcccttggcctctcctcccgcaagaatctgtgcatcaatccagcg
gttgtttccgctgagaatcgcgattccgtcgacgccggatgccggaagctcactgccagt
tgggtccgggcactcgccgttgagaatcctaacataccgacgtgtcagttctttgaaaac
tacgagaaagctgcgtccgaagcggttttgccgccgggggtgtacactttgcaggattta
cgggcgtttgggagggataaggggtggtgcccgtactttttagcacggcacatggtgcaa
tttgcaaatgtggtcgtttatagttatcagtacttgcttgatcccaaggtggctgggatt
atatcaaaggagatgcagagggagtctgtggtggtgtttgatgaggcacataatatcgat
aatgtgtgtattgaggcgcttagtgttagtgtgaggaggcagacccttgaaggggctaca
aggaatctcagtaaaatggctcaggagattaataggttcaaggccactgatgcgggtaga
ttgagagcagaatacaacaggcttgttgagggtttggcccagaggggaaacttacctatt
tcagacacctggcttgcgaatcctgctttgcctgatgatattctgaaggaggctgtgcca
ggaaatattcggcgagcagagcatttcttgtctgttttacgtagattggttcagtatctc
catggtcggctggaaactgagaatgttgagaaggaaggacctgttgcctttgttgcctcg
attaattcccaggctggaattgatcagaaaatgttgaagttttgttatgatcgtctgcac
tccctcatgctgaccctagaaattactgacacggatgagtttttacatatccaaacaata
tgtgactttgctacacttgtgggaacatacactaggggattttcaatcatcattgaacca
tttgatgaaaggatgccacatattcctgatcctgtactgcagcttagctgtcatgatgct
tctcttgccataaagcctgtatttgaacgatttcaatcagttgtgattacatctggaact
ctaagccccattgatctctatcctcgccttcttaatttcaatccagttgtcagtcggagt
tttacaatgtccttgacaaggaactgcatatgcccaatggttctcactcgtgggagtgac
cagcttcctgtgagtacaaaatttgatatgagaagtgatcctggtgttgtaaggaattat
gggaggctcctgctggagatggtgtctgttgttcccgatgggattgtatgtttttttgtc
agttattcatatatggatggaattgtcaatacttggaatgaaagtggaattttaaaggaa
ataatgcaacataagcttgtctttattgagactcaggatgtggtggaaactacattagct
ctagacaattatcgcagagcttgtgactgtgggagaggtgctgtctttttctctgttgca
agggggaaagtagctgaaggtattgattttgatcgacattatggaagattagtgatcatg
tttggtgttcctttccaatacacattaagcagaatattgcttgcacggttggaatattta
cgtgagacattccagataaaggaaggcgattttctgacttttgatgcattgaggcaagct
gcacaatgtgtgggccgagtaatccgttcaaaggcagattatgggatgatgattttcgct
gacaaaaggtacagtcgtcatgataaacgctctaaattgcctgggtggattctgtcacat
ttacgtgatgcacacctgaatttgagcactgacatggctttgcatattgcacgagagttt
ctccgcaagatggctcaaccatatgataaggcaggtgtgagcggtaggaaaaccctcttg
tcagaagaagatttggagaagatgggggatggcactacgaacgaaatgttgttttga

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