KEGG   Vitis vinifera (wine grape): 100241130
Entry
100241130         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2 isoform X1
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100241130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100241130
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100241130
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     100241130
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2 DUF5689
Other DBs
NCBI-GeneID: 100241130
NCBI-ProteinID: XP_010659082
LinkDB
Position
13:join(22321578..22321592,22322003..22322171,22322320..22322402,22322531..22322650,22322974..22323050,22323528..22323591,22323926..22323996,22325593..22325670,22325759..22325804,22326553..22326733,22326825..22326877,22327046..22327119,22327292..22327409,22337365..22337449,22341781..22341896,22351308..22351435,22351512..22351591,22354715..22354956,22355037..22355201,22355340..22355504,22355622..22355696,22358978..22359081,22359162..22359237,22361256..22361384,22361483..22361623,22362695..22362907,22364812..22365066,22365684..22366097)
AA seq 1178 aa
MENEQALEKMATAGPDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKL
RIWFGQPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFN
LGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSM
VRNSFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVL
KALIDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQH
IGEHFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVP
DNPDVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDEINKRKNFEFSSLAHVKKVMD
KNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFA
GLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMS
ILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISV
IPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEI
RCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSS
QAINCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILN
KSSVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMI
NPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKNKKHPQKVNIRFRRPRNPIIGD
KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL
HGKFVDATPFSDSLRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTC
EIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGA
AYLLHDRLHTCSDHHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQ
TSKGMETVSMPYIFRFLAAELAAMNIKMTLQLSNGAGA
NT seq 3537 nt   +upstreamnt  +downstreamnt
atggaaaacgagcaggctcttgagaaaatggctacggcaggcccagattacgagccgctg
cgagagctatttcagcaccatatcgactccttcgatcacttggtggagtttgggttggag
actctgctcatgagcgtgaaacctgttgaagtcgttgattcattcaccaaacagaagctt
cgaatttggtttgggcaaccggagttatacccacctcaaaaggagcgttctgcccggaca
atgcgcgatgcattatatcctttcgagtgtaggcaagcaaaaatttcatattcggggaag
cttttggctgatgtttgctttcaatatgggaatggagttgccattagagaaaaatttaat
cttgggcagtttcctataatgttaaagtctaaactatgtcacttgagaggtgccgatccc
caaaagttagtttcttgcaaagaagagtcatcagaaatgggcggttacttcattttgaat
gggcttgagagagttgttcgacttctgatcttgccaaagcgaaactatccaatgagcatg
gtgcggaattcatttcgtgatcgccgagagggatatactgataaagcagttgtcataagg
tgtgtaagagaagatcaatctgcagtaacagtaaaattgtattaccttcgtaatggaagt
gcaagacttggattttggatacaagggagggaatacttgcttcctgtgggtgttgttcta
aaggctctgattgacactactgatcatgaaatttatgagagtttgacatgttgctacagt
gagaaatatgaagggggaaagggtgctgttggcactcagcttgtgggtgaaagggtgaaa
attatccttgatgaagttcgggatttgtctctttttacacgccatcaatgtctccagcat
attggagagcatttccaactggtgatggatggactggaaaatgaaagttattccattgtt
gcagatgcagttcttagagaatacatatttgttcaccttgataacaattatgacaaattc
aatctgctcatcttcatggtgcagaagcttttctcacttatagatcagacttctgtgcca
gacaaccctgatgtattgcagaatcaggaagtattactgcctggtcacttgatcactatt
tatctcaaggaaaaactacaagagtggctgtacaaggcaagacgacttcttcaagatgag
atcaacaaaagaaaaaatttcgaattcagcagcttggcccatgttaagaaggtcatggat
aaaaatccttcaagacaaatcagcttagctgttgagaatatgttgaagactggaagactc
gtcacacaatctggtttagatctacaacagcgtgcaggcatgactgttcaggcagaaagg
cttaattttcttcgttttctttctcattttcgagctgttcatcgtggggcttcatttgct
ggacttcgcaccacgagtgtgcgaaaattgctacctgaagcttggggttttctttgccct
gttcacacacctgatggggagccttgtggattgctgaaccatatggcttctacttgtcga
atcacatcatattttgattcccggggaaacactagagattttttcaaaataaggatgtct
attctcagtgttctgattggaattggaatgacacctgcactaccaaagcttgttcaagct
ggtcctcctgaagttctttctgttattttagatggtcgtgttgtaggctccataccttct
agtgaagttgaaacagctgtcaatcatctaaggagattaaaagtgtccgcgatttcagtg
attcctgatgatctggaggtgggatacattcctttgagcatgggtggtgcttatcctggt
ttgtacctgttcacatctccttctagatttgttcgaccagttagaaatatttctattcct
tctgaggaaggtcatgatattgaactcattgggccttttgaacaggtttatatggaaata
agatgtcctgatggtagcgatggaggaaggaggaatatttttcctgcaactcatgaagag
atccatcccactggaatgctcagtgttgttgctagtcttacaccttggtcggatcacaac
cagagcccgcgtaatatgtaccagtgtcagatgggaaaacaaacaatggctttctcttca
caagcaattaactgtcgggcagatcaaaagctataccatcttcagactcctcaaactccc
attgttcgtacaagtgcatatgtgaagtacagcatggacgaatttccaacagggacaaat
gcaattgttgctgttctagcatattcaggatacgatatggaggatgctatgattttgaat
aagtcatctgtggatagagggttgtgtcatggacaaatataccagacagaaactatcgac
ttatctgatgaaaacaacaaatcagatcgtggccaaagaatgtttagaagaagtaatgtt
gataagtcagcaaattccttgattgattcagatggacttccatatgttggtcagatgata
aatccaaatgaaccatattgtagtatctataatgaagtaacaagctcaacaagggctacc
aaattaaagggttcagagcctgttattgttgactatgttgctcttgatgcgaaaaataaa
aagcatcctcaaaaggtgaatattcgttttcggcgtcctagaaatcctattattggtgat
aaatttagtagcagacatgggcaaaaaggtgtttgctcgcagttgtggccagatattgat
atgccattttcaggagttactggaatgcgcccagaccttattattaatccccatgcattt
ccttcaagaatgacaattgcaatgcttttggaatctgttgctgctaagggaggtagctta
catggaaaatttgtggatgcaacgccattttctgactcattaaggaaagctaatggagaa
gcaggatctgaatcaagttcacttgttgatgaactgggttccatgttaacctcttacggg
tttaattaccacggtgtagaggtattgtacagtggattttatggtacagaactcacatgt
gagatttttattggacctgtttattatcagcgactgcggcacatggtctcagacaaattt
caggttcgctccactggaacggtagaccaggttactcgacaacctattaaaggaagaaag
cgtggtgggggtatccgttttggagaaatggaacgagactccatgcttgctcatggggct
gcatatttattacacgacaggcttcatacatgctctgatcaccacatcgctgatgtgtgt
tccctatgcggaagcatcctcacaacatcaatcatccagccacaaaagcgagcagtgaga
gagatcggaggactacctcctgggagggctcccaaaaaggtcacttgccacgcctgccag
acaagtaaaggaatggagacagtctcaatgccctacatttttagatttttggctgcagaa
ttagctgctatgaacataaaaatgacccttcagctaagcaatggagcaggggcctga

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