KEGG   Vitis vinifera (wine grape): 100241432
Entry
100241432         CDS       T01084                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03410  Base excision repair
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100241432
   03410 Base excision repair
    100241432
   03420 Nucleotide excision repair
    100241432
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100241432
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100241432
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     100241432
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    100241432
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      100241432
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 100241432
NCBI-ProteinID: XP_002269920
LinkDB
Position
6:join(22555526..22555684,22556500..22556565,22556684..22556743,22556856..22556951,22559937..22560097,22560351..22560439,22560554..22560771,22574951..22575037,22575131..22575265,22576732..22576854,22585242..22585325,22592989..22593153,22593357..22593533,22596406..22596519,22601541..22601645,22611427..22611545,22611638..22611779,22611858..22611952,22612150..22612255,22612376..22612455,22612569..22612745,22613352..22613439,22613629..22613709,22613801..22613944,22615223..22615318,22615524..22615724,22623912..22623966,22624055..22624197,22624277..22624740,22625990..22626137,22626224..22626421,22626534..22626608,22628003..22628193,22629264..22629447,22629546..22629610,22633302..22633434,22633545..22633646,22633725..22633808,22635174..22635248,22635489..22635548,22635652..22635914,22636032..22636080,22636826..22636986,22637070..22637136,22638462..22638608,22639459..22639629,22639726..22639899,22640301..22640407,22641380..22641740)
AA seq 2214 aa
MSGEIRRRDRADVWKHKKQKLIRNAEEEVESKLGLDLFSEGEKRLGWLLTFASSSWEDEE
THKVYSCVDLYFVSQDGSSFKSKYKFRPYFYAATKDKMEMDVEAYLRRRYEGQIADIEIM
YKEDLDLKNHLSGLCKSYLKISFDNVQQLMHVKSDLLHVVERNRAKFDAAEAYESILTGK
SKQRTQDFIDYIVDLREYDVPYHVRFAIDKDVRCGQWYDVNVSSAGVMLERRTDLLQRAE
VHVCAFDIETTKLPLKFPDAEYDLVMMISYMVDGQGYLIINRECVGEDIEELEYTPKPEF
EGCFKVTNVKNEKELLRMWFAHMREVKPGIYVTYNGDFFDWPFLESRAAHHGLKMSDEVG
FQCDKNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRF
AKELPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMV
QAYKANVICPNKHQSDPEKFYHNQLLESETYIGGHVECLESGVFRSDLPTSFKLDPSSYE
QLIVNLDRDLQYAIRVEGKMDVESVSNYDEVKNAIKEKLMKLQGEPIREEFPLIYHLDVA
AMYPNIILTNRLQPSSIVSDEICTACDFNRPGKNCLRKLEWVWRGEAFMAKKSDYYHLKR
QIESELVDGGDSRFSKSFIDLPKTEQQLKLKERLKKYCQKAYKRVLDKPATELREAGICM
RENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIRIQEAQDMVVLYDSLQLAH
KCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGRPLELDTDGIWCVL
PGSFPENFTFRTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPINKTYATHSECSI
EFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYAAVASVANRWLDLLDNQGKDIVDSELLDYISESSTMSKSLADYGEQ
KSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDAEIMKFY
VRKWCKISSDVGIRSIVDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLYKKV
REKEEKFRQRKLVDMFGSLKRDDNVKMNVDAITSNHVISEENIEDLEDFRNKGRTSSAGP
RPIVRCYEVNGKQQSDAMNCLANSPQEPANHSESALTPMQPTDISTDNIDRNVDYQGWLE
MKKRKWKDAREKRKRQRMDNSKTSNQTNGVSELPGGVINHKQAQGRTGVNSYFRRHELAL
THSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKALITEEFPGRRVNKT
LPHGHHSYNLIEIIIDEDQFRGESRKLAAHLADPEVEGIYETKVPLEFNAVLQIGCVCKV
DKTAKKRNIQDGWSLSELHMKTTTECPYLEQSISFFYLYHSISEGRAIYVGYFPASRTIS
VVVVNPFQNKELSPSIIEKQFREACEALSIEPPQPRNGISFKVDYVGYVKDAEKFLQRTI
NDHRHQHHGPEVAVIECPNVHLLKSGIRALDDLPCVNIPSNARDSHYQALGWQIVAAKIG
MQRCAAATQWLNERISLARYAHVPLGNFEPDWLIFTADLFFSRALRDQQQVLWISDNGIP
DLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGALFG
FEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLIQRCLADAVSSGNVFADAILQHLYRW
LYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKLGATIVFANFSKVIIDTGKSDLSAAK
AYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQYNYGGVQARSHGGSLIGSSDPTSES
IEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFMYTPWKYAREQAANRASARNGDSCTP
SITAAAAEVFESHITEYLKEQISSYFADKLLRIVRDTVLHMKGMNRSENDQHTGDAALEF
IKHVCAVLALDQNVQHDILVMRKNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDC
RDLDLCRDSALLAQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQV
KAAHLAEQCSCAGSFRCKEDVSEFQSKMQVFLKIAMLQKFQLLQECTSWILEIR
NT seq 6645 nt   +upstreamnt  +downstreamnt
atgagcggcgaaatcagaaggcgagatcgcgcagatgtgtggaagcacaagaaacagaag
ctgatccgaaatgccgaagaggaagtggagtcgaagctagggttggatctcttctccgaa
ggcgaaaagcgcctcggttggttgctcaccttcgcatcctcatcttgggaggatgaagag
acccacaaggtctacagctgcgttgatctttattttgtttctcaggatggttcttctttc
aaatcaaagtacaagtttcgtccttatttctatgcagccacaaaggataaaatggaaatg
gatgttgaggcatatttgagacgacgctatgaaggtcagattgcggatatagagattatg
tataaagaggacctcgatttaaaaaaccatttgtctggcttatgcaaatcttatctaaag
atatcttttgataatgttcaacaattaatgcacgtgaagagtgatcttctgcatgttgtt
gaaagaaaccgggcgaaatttgatgctgcagaagcttatgaatccatattgacagggaaa
agtaaacaaagaactcaagatttcatagattatattgttgatctccgcgagtatgacgtt
ccttatcatgttcggtttgccattgacaaagatgtcagatgcgggcaatggtatgatgtc
aatgtatccagtgctggtgttatgctagagaggaggactgatcttttgcaacgtgctgaa
gttcacgtgtgtgcatttgatattgagacaacgaagcttccattaaaatttccagatgct
gaatatgatttagtaatgatgatctcatacatggttgatgggcaaggctacctgataatt
aacagagagtgcgttggggaagatatagaggagttggagtatactccaaaacctgaattt
gaaggttgttttaaagttacaaatgtaaaaaatgagaaagagcttcttagaatgtggttt
gcccatatgcgtgaggtcaagcctggaatttatgttacatacaatggtgatttttttgac
tggccatttctggaaagcagagctgcacatcatgggttgaaaatgagtgatgaggtagga
ttccaatgtgacaaaaatcagggtgaatgtcgtgctaaattttcttgtcacctggattgt
tttgcttgggtcaaacgtgatagttatctccctcagggaagccaggggctaaaggctgtt
accaaggctaagctgggatatgatccactggaggtgaatcctgaggatatggttcgattt
gcaaaggaattgccccagatgatggcttcatattctgtatctgatgctgtttctacttac
tacttgtatatgacgtatgtgcatccctttattttctcccttgcaactataatacccatg
ccaccagatgaagttttgcgtaaaggaagtgggactctgtgtgaaatgcttcttatggtt
caggcttacaaggcaaatgttatctgcccaaataaacaccaatctgatcctgagaaattc
taccataaccaacttttggagagtgagacatatataggtggacatgtggaatgccttgaa
agtggtgttttcagatcggatcttccaactagttttaagcttgatccatcttcctatgag
caactgattgtcaatcttgatcgtgatctacaatatgcgattagagtagagggaaagatg
gatgtggaatcagtctccaattatgatgaagtgaagaatgctatcaaggaaaagcttatg
aagttgcaaggtgaacctatacgtgaagaattccccctcatttatcatctagatgtggct
gcaatgtatccaaatattattttgacaaataggcttcagccttcgtcaatagtttcagat
gagatttgtactgcatgtgattttaatcgtccaggcaaaaattgtcttcgtaaacttgaa
tgggtttggcgtggagaggcattcatggcgaagaaaagtgactattatcatttgaagaga
caaattgagtctgagttagttgatggtggagatagccggttctcaaaatcttttattgac
ctgcctaagacagagcaacagctgaagctcaaagagcgcttaaagaaatactgccaaaag
gcttataaacgggtacttgacaagccagccactgaacttcgagaagcagggatctgcatg
cgggaaaattctttttatattgacactgtccgcagttttcgagatagaagatatgagtac
aaaggacttaataaggtttggaaggggaagctatcagaagccaaggctagtggaaattct
ataaggatccaggaagcacaagatatggttgttctctatgattcactacaacttgctcat
aaatgtattctcaattccttttatggatatgtcatgcgcaagggtgcaagatggtactcg
atggaaatggctggagttgttacctatactggagcaaaaatcatacagaatgcccgctta
ttgattgaaaaaattggaagaccacttgaactagacactgatggtatctggtgtgtgtta
cctggatcttttccagagaacttcacctttagaacaaaagacttgaagaagaagttgaca
atttcatatccttgtgttatgctaaatgttgatgtggctagaaataatacaaatgatcaa
taccagacactcgttgatcccatcaataaaacatatgcaacacatagtgaatgctctatt
gaatttgaagtggatggaccatacaaggcaatgattcttccagcttccaaggaagaagga
attttgattaaaaaacgctatgctgtcttcaatgatgatggaactcttgcagagcttaag
ggttttgagatcaagcgtagaggtgagctgaagctcatcaaagttttccaggctgagctt
tttgacaagttccttcatggttcaaccttagaggaatgctatgcagcagtggcttcagtt
gcaaaccgttggcttgatcttcttgataatcaagggaaggatattgtggatagcgagttg
cttgattacatatcggaatcaagcaccatgagcaagtctttagcagattatggtgagcaa
aagtcatgtgcagtgaccactgctagacggctggctgattttcttggtgatacgatggtt
aaagataaaggacttcgttgccagtatatagttgcatgcgagccaaggggaacacctgta
agcgagcgtgctgttcctgttgcaatatttgaaactgatgctgaaattatgaagttttat
gtgaggaagtggtgcaagatttcatcagatgttggcattcggtctattgttgattggtca
tattacaaacagcgacttggttctgcaattcaaaaaattataaccattcctgctgcaatg
caaaaggttgcaaatcctgttcctagggtagttcatcctgattggctgtataagaaggtt
cgtgaaaaggaggaaaaatttcgccaacgaaaattagttgatatgtttggctcgttgaag
agggatgataatgtcaaaatgaatgtcgatgctatcacctccaatcacgttatttctgaa
gagaatattgaagatttggaagacttcagaaacaaaggcagaacttcctcagctggacct
agacccattgttcgttgttatgaagttaatggcaaacaacagtcagatgctatgaattgc
ctagcaaattccccccaagaaccagccaatcatagtgaaagtgcattgacgccgatgcag
cctactgatatctctactgataatattgacagaaacgtggattatcaaggatggcttgag
atgaagaagagaaaatggaaagatgctcgggagaaaaggaagaggcaaaggatggataat
tcaaagacatcaaatcagactaatggtgtctcagagcttccaggtggtgtgataaatcat
aagcaagcacagggaagaactggcgttaattcatatttccggaggcatgaattagccctt
acacactcttattggcagataatacagcttgccccaagttcacagcatggccagtttttt
gcttgggttattgtagaaggagtgatgctcaagattcctattactgttcctagagtgttt
tacctcaactctaaagctctaataacagaggagtttccaggaaggcgtgtcaacaagact
cttccgcatgggcatcatagctataacctaattgagattataattgatgaagatcaattt
aggggagagagcagaaaacttgcagctcacttagcagatccagaagttgagggaatatat
gaaacaaaggtgccattggagtttaatgctgtcctccagattgggtgtgtttgcaaagtg
gataaaactgctaaaaaacgtaacatccaagatggctggagtttgagtgagttgcacatg
aagaccacaactgaatgcccttatctggaacagtccatctctttcttttacttgtaccat
agcatctctgagggacgagctatatacgttggatattttcctgcatctagaaccatatct
gttgtggtggttaacccttttcaaaacaaagaattatcaccatctattatcgaaaaacaa
ttccgtgaagcttgtgaagcattgtctattgaacctcctcagcctagaaatggtatcagt
ttcaaggtggactacgttggatatgttaaggatgctgaaaaattcttacaaagaacaata
aatgaccacaggcatcaacatcatggacctgaagttgctgttatcgaatgcccaaatgtt
catttgttgaagtcaggtatacgggctttagacgatctcccatgtgtcaacattccttca
aatgctcgtgattctcattatcaggctcttggatggcaaattgtggctgcaaaaattgga
atgcaacgctgtgcagcggcaactcagtggttgaatgagagaatttctcttgcaagatat
gcccatgtaccgctggggaatttcgagcctgattggcttatatttacagcagatctcttc
ttttcaagagctttacgtgaccagcaacaggtgctttggatatctgataatggaattcca
gatctaggaggccttaatgaagaagatacatgttttgctgatgaggtccatcaacctgtt
cttacttatcctggtgcttatagaaaagtttctgtggagctaaagattcatcaccttgct
gtaaatgctcttctgaaaagtaaccaagtaaatgaaatggaaggaggtgctttatttgga
tttgaacaggacatgaatatgggagcacatggtttcaatgaacagtgtggctttgatgag
gcaaccttatgtgcgcctacatttcgtgtcctaaaacaattgatccaaaggtgcctagca
gatgcagtttcatctggaaatgtatttgctgatgcaatactgcaacatctatatcgatgg
ctatacagcccacaatcaaaacttcatgacccagctcttcaccgcattcttcacaaggtc
atgcaaaaggtgtttgcattgttgttagctgaatttcgaaaattgggtgccacaattgta
tttgctaacttctcaaaggttattatagacaccggaaaatcagacttgtctgcagccaaa
gcatactgtgatagtttactcaaaactctgcaaactagagacttatttgagtggattgag
attgagccattgcacttctggcattccttgctttttatggatcagtacaactatggtggg
gtccaggccagatcccatggtggatcattaataggtagttcagatccaactagtgaaagc
atagaagatgaatctcaagtggatattgtatcaagctggaacattgctgaacaattgcca
aagacaattcaagatcattttgttttgatagtttctgaatttatgtataccccatggaaa
tatgcacgagagcaagcagcaaatagagcatctgcaaggaatggtgactcatgtactcca
tcaatcactgctgcagctgctgaggtttttgaatcacacattactgaatatctcaaagag
cagatcagctcttattttgcggacaagcttcttagaattgttcgtgatacggttcttcat
atgaaaggaatgaacagatctgagaatgaccagcatactggggatgctgcacttgagttc
attaagcatgtttgtgctgttctagctcttgaccaaaatgttcagcatgatattctggta
atgaggaagaatctgttaaaatatgtgcatgtgagggagtttgctccagaggcagagttt
tgtgatccctgccagtctttcatcttaccaaatgttatttgcagctattgcaatgactgt
agagacctggacttatgccgtgattcagctttattggctcaggagtggcgttgtgctgtg
ccacagtgtgggcagccttatgaccgtgaggtaatggagaatgctcttcttcaaattgta
cgacagagagaacgtctctaccatgtgcaggacttggtgtgcctcaagtgcaatcaggtg
aaagcagcacatttggctgagcaatgttcatgtgccggctcattcaggtgcaaggaagac
gtgtctgaattccaaagcaaaatgcaggttttcttgaaaatagccatgcttcagaaattt
caacttctccaggaatgcacctcctggattttggagatcagataa

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