Vitis vinifera (wine grape): 100241658
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Entry
100241658 CDS
T01084
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvi03016
]
100241658
Enzymes [BR:
vvi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
100241658
Transfer RNA biogenesis [BR:
vvi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100241658
Prokaryotic type
100241658
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
100241658
NCBI-ProteinID:
XP_010650836
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All DBs
Position
6:complement(join(8510859..8510874,8511434..8511846,8512825..8513283,8513848..8513992,8514608..8514756,8514850..8514962,8516144..8516179,8516268..8516499))
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AA seq
520 aa
AA seq
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MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSLHCSSSSSSTVTESNPDQSVQKWESF
RKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDR
SSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFD
ARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRSKYR
KQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGINGVISSDYDEGENQNSSEST
SFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIFNCSCGKLEKFL
GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSEVLI
LRGNSFSVRKKPGNVKRPEMLTLMESEEILKSVDEFYTSVILPQVSKFLDPSKSPWHDWL
ENLTLSSIPEAELDDVRTAWKLWKENFRSRTKVMSMDCCN
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcttctctgcggttcccgctcttcccatggattatctcgaaccatacttcc
aatcttcgtttctcaaaccctaggattctccctcagtggtcgctccattgttcatcttct
tcatcttcaactgtcaccgagtccaatccggaccagtcggtccagaaatgggaatctttt
cggaaaaagaaagtggtaatgcgggtcggatatgtcggcaccaattacagaggtttgcaa
atgcagcgagatgaaagctctttatcaactattgaaggagaattggaaactgctgtgttt
aaggccgggggaattcgtgatagtaattatgggaatctacacaaaattgggtgggacaga
agtagccgaactgataaaggagttcactcattggcaaccatgatatccttaaaaatggaa
ataccagcaaatgcatggaaggaagatcctaatggcattgcacttgcgaattatgttaac
tttcatcttcctaacaatatcaaagttttcagcattttaccatcacaaaggagctttgat
gctagaagggaatgtgatcttcggaggtattcttacctcctcccagctgaaattattgga
attaaaagtaactccagtgcttcagaaattgatcatcatatagcagagttcaacgacata
ttgaatacttttgagggagaacatcctttccaaaactacacaatacggtctaagtacagg
aaacagtttcctgcaaagcaatctcctggtaatggtggagtgttcagaagagcaaaatca
tctggtgaggcatcaacttctgagtttgaggtaagtgatggagaagaaaattctggaatc
aatggagtgatttcatcagattatgatgagggagagaatcaaaattcatcagagtccacc
agctttgttgaacatccagttggaagttccaataataatgagaagggtttgaaggagcaa
agtcccaaattagttgttcgtgcaagatggctacatggacctgatgagagagatagaatt
agtgcttcccacttcagaaagatttttaactgttcttgtggaaagctggagaaatttctt
ggattagattacgttgagctttccatttgtggagagtctttcatgttgcatcaaatccgc
aaaatggttgggactgcaatagcagtaaaacgggaattactcccaagagatattttgaca
ttgtcattgaccaagttctcacggattgtcctgccccttgccccttctgaagttctaatt
ttgaggggtaacagtttctcagtgaggaaaaaacctggcaatgtaaaaaggcctgaaatg
cttacattgatggaatctgaggaaattctcaagtctgttgatgaattctacacatctgta
attttgcctcaagtttcaaaatttttggacccttcaaagtctccttggcacgactggctt
gagaacctaactctgtcaagcattccagaagctgagttggatgatgtcaggactgcttgg
aaactgtggaaggaaaatttccggagtagaaccaaggttatgtccatggactgctgtaat
tga
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