Vitis vinifera (wine grape): 100241725
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Entry
100241725 CDS
T01084
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100241725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100241725
Enzymes [BR:
vvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100241725
Spliceosome [BR:
vvi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100241725
Complex B
100241725
Complex C
U2 SnRNP specific factors
100241725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100241725
NCBI-ProteinID:
XP_002277419
UniProt:
D7U2J6
A0ABY9C5F5
LinkDB
All DBs
Position
7:join(4472845..4473439,4475894..4477122,4477528..4477567,4477905..4478304,4478417..4478468)
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AA seq
771 aa
AA seq
DB search
MSKRKFGFEGFGINRPATYNFERSQAPQRLYVPPSSRSGGHDNYEDHDLDNIDYDDKDEH
GEVAGGGGEVDDGEIDPLDAFMEGIHEEMRAPPPPKLVEKAEKYVDDDEDDPMESFLRAK
KDTGLALAADVMHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVLDKKKIEPIPALDHSS
IEYEPFNKDFYEEKDSISGMTEQDVTEYRKSLSIRVSGFDVPRPIKTFEDCGFSPQLMNA
ITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGP
IGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCEIVIATPGRL
IDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASK
KATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSI
KSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPM
ELMDLAMKDGRFRSKRDARKGGGKKSKGKGGNGRGVRGVDFGLGIGYNPESNNPSSQTVP
SRAAAVNSLRTGMMAQFKSNFVAATSGSQNQGSNNSPSTYANKRPVLQGFVSGGSIGGDM
NRAQTTSSFSPAPTSAGKTSGQNSGENASHRNSENSRDRSRERRRPSGWDR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaaaattcggattcgaaggtttcgggataaatcggccagcgacctacaac
ttcgagcggtcccaagctccgcagcgcctctacgtgcctccgtcgtctcgctccgggggc
catgacaactacgaggatcatgacctcgacaatatcgactacgatgacaaggatgagcac
ggggaggtggctggaggcggtggtgaggtggatgatggtgagatagacccacttgacgct
ttcatggagggaatccacgaggaaatgagagctccgccgccgccgaagttggtggagaag
gcggagaagtacgtggatgatgatgaggatgatccgatggaaagtttcttgagggcgaag
aaggatacggggttggcgttggctgcggatgtgatgcatgccgggtatgattcggacgag
gaggtttacgcggctgctaaggctgttgatgcgggtttgatagagtatgattcagatgat
aatccgattgttttggataagaagaagattgagccgattccggctttggatcatagttcc
attgagtatgagcccttcaataaggacttctacgaggagaaagattcgatttcaggaatg
actgagcaggatgtcactgaatacaggaagagcttgtcgattcgtgtttcaggttttgat
gtgccaagaccaattaagacgtttgaagactgtggtttctctccgcaattaatgaatgct
atcacgaaacaagggtatgaaaaacctacaccaatacagtgccaagcttttccaattgtg
ctttctggaagagatattattgggatagcaaaaactgggtctggaaaaactgcagctttc
gtgctgccaatgattgtccatattatggatcagcctgaactggccaaagaagaaggtcct
attggagtgatatgtgctccaactagggaattagctcatcaaatatatttggagtcgaag
aagtttgctaaaccatatggaattcgtgtatctgccatctatggtgggatgtccaaactt
gaacagttcaaagaactcaaatcaggatgtgagattgtaattgctactcctgggagattg
atagacatgataaaaatgaaggccctgacaatgttaagagcaacttacctagttcttgat
gaggctgataggatgtttgaccttggatttgagccacaaataaggtctatcgttggtcag
attcggccagaccgtcagactttactcttttcagcgacaatgccccgcaaagttgaaaag
ttagcaagagagattcttactgatcctgtaagagttaccgttggggaggtgggaatggcc
aatgaagatatcacacaagttgttcaagtgattccttctgatgctgagaagttgccctgg
cttcttgataagctacctggaatgattgatgatggagatgttctagtttttgcctcaaag
aaagccacagtagatgaaattgaatcacaattgggccaaaaggggcttaaaattgcagct
ctccatggtgacaaagaccaggcttctcggatggacattctccaaaaatttaaatctggc
atctatcatgttcttattgcaactgatgtggctgctcgtggtctagacatcaagtcaatc
aaatcagtggtgaactttgatattgctagagacatggatgctcatgttcatcgtattggt
agaactggtcgtgctggtgataaagatgggactgcatacaccctgattacacacaaggag
gctcggtttgctggagaattggttggaagtctgattgcagccggacagaatgtgcccatg
gaactaatggatcttgctatgaaggatgggagattcaggtccaaacgtgatgccagaaaa
ggaggtgggaaaaagtcaaaaggaaagggaggcaatggtcgaggtgttcgtggtgtggat
tttggtttgggcatcggatataaccctgagtccaataacccttcatctcaaactgttcca
agtcgagctgctgcagttaattctttaagaacgggaatgatggcacaatttaaaagcaat
tttgttgctgctacatctggttcccaaaatcagggctccaataacagtccaagtacttat
gccaacaagagaccagttttgcagggttttgtttctggtggttcaataggtggagatatg
aatagagctcaaacaaccagttcattcagccctgctccaacatcagcgggaaaaaccagt
ggtcagaactctggagaaaatgccagccacagaaactcggaaaactctagagatagatcc
agagaaaggcggaggccttccggttgggatcggtga
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