Vitis vinifera (wine grape): 100242063
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Entry
100242063 CDS
T01084
Name
(RefSeq) THO complex subunit 5B isoform X1
KO
K13174
THO complex subunit 5
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100242063
09122 Translation
03013 Nucleocytoplasmic transport
100242063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100242063
03041 Spliceosome [BR:
vvi03041
]
100242063
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100242063
Spliceosome [BR:
vvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100242063
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
100242063
NCBI-ProteinID:
XP_002284804
UniProt:
A0ABY9DR35
F6H1D0
LinkDB
All DBs
Position
18:join(8723893..8724111,8724262..8724552,8724951..8725287,8726109..8726446,8726560..8726819,8727154..8727757,8727834..8727968,8728180..8728446)
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AA seq
816 aa
AA seq
DB search
MEVTMDDKNETEDALMAPEPRIEKSAYDMLQQSKASMEEIVGKMLSIKKEAQPKSQLREL
VTQMFLHFVVLRQANRSILLEEDRAKAETERAKTPVDFTTLQLHNLMYEKNHYVKAIKAC
KDFKSKYPDIELVPEEEFFRDAHEDIKGTVMSNDSAHNLMLKRLNFELFQRKELCKLHEK
LEQRKKGLLETIANRKKFLSSLPSHLKSLKKASLPVQQQLGVLHTKKLKQQHSAELLPPP
LYVIYSQFTAQKEAFGENIDMEIVGSVKEAQAFARQQANKDSGVSTNVDNSRLEDDAPDE
EDDGQRRRKRPKKVPSKENLDQAGVYQVHPLKIILHIYDDEVSDLKSAKLITLKFEYLLK
LNVVCVGIEGSHEGPENNILCNLFPDDTGLDLPRQSAKLFIGNARAFDERRTSRPYKWAQ
HLAGIDFLPEVSPLLTCSETPSSETAKNATVVSGLSLYRQQNRVQTVVQRIRSRKKAQLA
LVEQLDSLMKLKWPTVSCKSIPWALHTPLCNFNGWSSVGSSPNQASALSVTSKEQVQETL
DIDMDGKSGTPREEVESAREDGELPSLVPVASVVNEAKLTPLRGSELEHSRRLALISKSI
VPPTNKIKSLSFKKHDDDSDLLLDSDSDLDEPAQIEPEAENIASDGCYVMIENSWVDYGV
REFCLVLTRKMDANERNVKLEAKIKISMEYPLRPPLFAISLYTVSPVESDSEIEGSEWYN
ELRAMEAEINLHILRMLPLDQENYILAHQVCCLAMLFDYHMDEASSSSEKIKSTSVVDVG
LCKPVTGRLLARSVRGRDRRKMISWKDMECTPGYPY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacaatggatgacaagaatgagacagaagatgcgctgatggcaccagagccc
aggatcgagaagtcggcgtacgatatgctgcagcaaagcaaggcttcaatggaggagatc
gtgggcaagatgctttctatcaagaaagaagctcaacccaaatctcaactccgcgaactc
gtcactcaaatgttcctccacttcgtcgttctccgccaggcgaatcgatctatcttgctg
gaagaagaccgtgcgaaagctgaaacagagcgtgccaagaccccggtggacttcacgaca
cttcagcttcacaatttgatgtatgagaaaaaccactatgtgaaagccatcaaggcttgc
aaagatttcaagtccaagtatcctgacattgaactggtgcccgaggaagaatttttcaga
gatgcacatgaggatattaaaggcaccgtgatgtcaaatgacagtgctcacaatctgatg
ctcaagaggctcaattttgagctcttccagcgtaaggaactgtgcaagcttcatgaaaaa
ctggaacagaggaaaaaaggtcttttggagactattgcaaatcggaagaagttcttatcg
agtctcccttcacaccttaagtctcttaagaaagcatctttgccagtacagcagcaatta
ggggttttgcatacaaagaaactaaagcagcagcactcagcagagttgcttccacctcct
ctctatgtaatttactcacagttcacagcacaaaaagaagcatttggagaaaatatagat
atggagatagtaggaagtgtgaaggaagctcaagcttttgcccgtcagcaagcaaataag
gattctggtgtttctaccaatgtagacaattccaggttagaggatgatgcacctgatgag
gaagatgatgggcagagaaggagaaagcggccaaagaaggtaccaagcaaagagaatctt
gaccaggcaggagtataccaagttcatccactgaaaatcatccttcacatatacgatgat
gaggtctctgatctaaaatctgcaaaactcattactctcaagttcgaatacttgttgaag
ttgaacgttgtatgtgttgggattgaaggctctcatgaaggacccgagaataacatcctg
tgcaatctattccctgatgacactggccttgaccttcctcgtcagtcagctaagcttttt
attggtaatgcccgtgcatttgatgaaagaagaacttctcgtccatataagtgggcccag
catttggcaggaattgattttttgccggaggtgtcacctttgcttacttgcagtgaaacc
ccaagcagtgaaacggctaaaaatgctactgttgtttctggcctttcactataccgccag
cagaatagggttcagacagttgtgcaaaggattcgctctcggaaaaaggctcagctggct
cttgtggagcagcttgattctcttatgaagcttaaatggcccactgtgagttgcaaaagt
attccctgggccctgcatacccctttgtgcaatttcaatggttggtcgtctgtagggtcc
tctcctaatcaggcttcagctttgtctgtcaccagtaaggagcaagttcaggagactttg
gacatcgatatggatgggaagtccggtacaccaagggaagaagtagagagtgcaagggaa
gatggggaacttccatctttggttccagttgcatctgttgtaaatgaggctaaactcact
cccttgagaggatctgaacttgagcattccagacgtctagctttgatttcaaagagcatt
gtgcctccaactaacaagataaaatcactgagcttcaagaaacatgatgatgattcagac
ctcttattagattctgatagtgatctcgatgagcctgcacaaattgagccagaggcagaa
aatatagctagtgatggatgctatgtaatgatcgagaactcatgggtggactatggtgtc
agggaattttgccttgttctaacaaggaaaatggatgcaaatgagaggaatgtaaagtta
gaggcaaagatcaaaatcagtatggagtatcctcttaggcctcccctttttgcaatcagc
ctatacactgtatctcctgttgaaagtgattctgaaattgaaggatcggagtggtacaat
gaactgcgtgccatggaagcagagatcaatcttcacatattaaggatgctgcctttggat
caagagaactatatcttagctcatcaagtgtgttgtcttgcaatgttgtttgactatcac
atggatgaagcatcttcttcttctgaaaaaataaaaagtacttccgtggttgatgttggt
ctatgcaagcctgttacaggtaggcttcttgccagatcagttagagggagggatcgtagg
aagatgatctcctggaaagatatggaatgcactcctggctatccttactag
DBGET
integrated database retrieval system
