Vitis vinifera (wine grape): 100242306
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Entry
100242306 CDS
T01084
Name
(RefSeq) serine/arginine-rich splicing factor SC35
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100242306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100242306
Spliceosome [BR:
vvi03041
]
Common components
Common spliceosomal components
SR proteins
100242306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RRM_Nup35
RRM_RdRP1_2
NV_polyhedrin
Motif
Other DBs
NCBI-GeneID:
100242306
NCBI-ProteinID:
XP_002274860
UniProt:
A0ABY9CYV5
D7TR31
LinkDB
All DBs
Position
12:join(12835679..12835754,12835870..12835948,12838868..12838947,12839247..12839313,12839677..12839748,12841840..12842040,12842134..12842320,12842421..12842426)
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AA seq
255 aa
AA seq
DB search
MSHFGRSGPPDIKDTFSLLVLNITFRTTADDLFPFFDKYGKVVDIFIPRDRRTGESRGFA
FVRYKYADEAQKAVDRLDGRIVDGREITVQFAKYGPNAERIHKGRIVETFPKSRGRSRSH
SPRRRYRDDNRDRDYRRRSRSRSYDRYESDRYRGRERDYRRRSRSHSASPDYRRGRYDDG
RRNLSRSRSIDSVSPTRYTPSPKRNFPPRVTPSPPRGGSQDRLSGEERSPSRSISPRGRP
AGSRSPSLHKSDADD
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactttggaagatcaggtccgccggatatcaaagacaccttttctttactcgtt
ctcaacatcaccttccgcaccaccgcggatgatctgtttccgttttttgacaaatacgga
aaggtcgtcgatatcttcattcccagagatcgaaggactggtgaatcgcgtggttttgca
tttgttcgttataagtatgcagatgaggcacaaaaggcagtggataggctagacggaagg
attgttgatggtcgagaaattacagttcagtttgctaaatatgggccaaatgctgagcga
atccacaaaggaagaattgttgaaacatttccaaagtctagaggcaggtcaagaagtcat
agtccacggcgaaggtatcgagatgataacagagacagggattacaggaggagaagtcgc
agcaggagctatgataggtatgaaagtgacaggtaccgtgggagggagagagactatcga
cgtcgaagcaggagccacagtgcaagtcctgattaccgcagaggccggtatgatgatgga
cgacggaatctgagtaggagtcggtcaattgatagtgtttcccccactcggtatacacct
agtcctaagagaaattttcctcctcgtgtgaccccatctcctcctaggggtggtagtcag
gacagactcagtggggaagaacgatcccctagtcgaagtatttcaccaagaggtcggcct
gctggttcacgtagcccatccctgcacaagtcagatgctgatgactga
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integrated database retrieval system
