KEGG   Vitis vinifera (wine grape): 100243465
Entry
100243465         CDS       T01084                                 
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
  KO
K13217  pre-mRNA-processing factor 39
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100243465
Spliceosome [BR:vvi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    100243465
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N TPR_14
Other DBs
NCBI-GeneID: 100243465
NCBI-ProteinID: XP_010655626
LinkDB
Position
10:complement(join(9783609..9783731,9783984..9784058,9786295..9788157,9788642..9788791,9789407..9789487,9800595..9800711,9800841..9800993,9802501..9802644,9802730..9803096,9810805..9810972,9819477..9819706,9838627..9838727,9839311..9839329))
AA seq 1196 aa
MEDDCSVDFDVLKLPEFVAKGLLGFDAWTSLISNIEKTYPDDIKKICLVYDSFLSEFPLC
YGYWRKYADHKSRLCTVDKVIEVYERAVQSATYSVGLWVDYCSFSMSVFEDPFDVRRLFK
RGLSFVGKDYLCHTLWDKYIEFELSQQQWSFLAHVYILTLRFPTKKLHHYYDSFKKLVAI
CQEEIESHGNSGMEVQSELVVDSENTTYYKDDEVSHITTDLLDPSVGSDRYKALQKYLSI
GEQLYQKACQVDAKIHGFETHIRRPYFHVKPLDVSQLENWHQYLDFVEVQGDFDWAVKLY
ERCLIPCANYPEFWMRYVEFMEIKGGREIANFALDRSTKIFLKSIPAIHVFNAWFKEQTG
DVFGAHAAFVQYETESDSSFIENVIKEANMKKRLGNFAAASNIFKEALAIAVEKQKFHIL
PNLYIHFSRLEYMITGSVDAARDVLIDGIRCVPESKMLLEELIKFAMMHGGPRHINVVDA
VVANAISPGTDVSQGLSAKDGEYISRLYLEFVDLCGTIYDVKKAWNRHIKLFPHCLRTMS
IYKYPATSSKPLRIAMEGRPDIIAAMPCHPFGDSGSDHLALIPIEEQGLSCPENHDIHSE
QVVNVQLEPEAANKSAQEGLQLVIPKVPGQHREEASEPNVSDSVVKEYNEIESVQALLAL
SRANDLQQEVEHEPLQDPKSLSLECLSLNPQGKESPESIPASSHEVEAPEEACRSNGIIT
ESVYNTDENPPSSSPVGTSADDPAEIHSESVGPLSSASPQLPTPTEELSQSLVPKSGGGK
WNQTDGTDKYAQIQMSPERHKNPPPSEAVPHPQLSVNGAGNWRQMNNADKVHRDSSPRFH
GHSRNKRRASRHVPLEQQYPRDQIGTQMLVSQGNPGQPFSWQNQQNQQGSQAQHPIQTAG
QGNLTATHAWPMQIVQQQNFASASSCQVPAQPVTQAQVSQYPMQSNEQYGHMQNSQAYNQ
MWHYYYYQQQQHFIQQQQLQLQQQPQQQQHPQESEQLQQQQLQPSQQPLSQQLQSHQQQL
LQQQYQQQHLELQQHYLQQHQQQFQHQQNHQQQLQLQQQQYVLQQQQSYQQQQQQQHLLY
LQQLQQQQQEHEPQKQQQQQQLQQKEDQEQQQQQLLITPLQIQQAWNNYQQQASLQYYDA
TSHSGTESNQQIMVPQGQPATPHSTSSSEHAASPGVQQQSPKLMKQTDDNSPINSV
NT seq 3591 nt   +upstreamnt  +downstreamnt
atggaagacgattgttcggtcgactttgatgtgctcaaacttcctgaatttgttgccaaa
ggcttattaggctttgatgcctggacttcacttatttcaaatattgaaaaaacatatccg
gatgacataaagaaaatatgtttagtgtatgactctttcttgtctgagtttcctttgtgc
tatggttattggaggaaatatgctgatcacaagtcacgtttatgcactgttgacaaagtt
attgaagtttatgaacgggcagtgcaatcagcaacttactctgttggtttatgggttgac
tattgtagcttcagtatgtctgtttttgaggatccatttgatgttcgcagactgtttaaa
agagggctgtcctttgtcgggaaggattacttatgtcataccttgtgggataaatacatt
gaatttgagctttctcagcagcagtggagtttcctagctcacgtttacattctaactttg
agatttccaacaaaaaaattacatcattattatgacagtttcaagaaattggttgccatt
tgtcaagaggagatagaatctcatggcaattctggcatggaggtgcagtcagagcttgtg
gttgatagtgaaaacacaacatattataaagatgatgaagtctctcacatcacaactgac
ctcttggatccatccgttggctcagatagatacaaagcactgcagaaatatttatccatc
ggagagcagctctatcagaaagcatgtcaggtggatgcaaaaatacatggttttgaaact
cacattcgaaggccttatttccatgtaaaaccacttgatgtcagtcaactagagaattgg
catcagtatctggattttgttgaggtgcaaggggatttcgactgggctgtgaagctttat
gagagatgcttaataccctgtgctaattacccggagttctggatgcgttatgtggaattc
atggaaattaagggaggacgagagatagctaactttgcattggatcggtcaacaaaaatt
tttcttaagagtattccagcaatccatgttttcaatgcctggtttaaggagcagactgga
gatgtatttggtgcacatgctgcttttgttcagtatgagacagaatctgattctagcttc
attgaaaatgttataaaggaagcaaatatgaaaaaacgactgggaaactttgcagcagct
tctaatatatttaaagaagcacttgccatagcagtggagaagcagaagtttcatattctt
ccaaatctatatattcatttttctcgacttgagtacatgatcactggtagtgtggatgct
gctagagacgtattaatagatggcattagatgtgtgcctgaatccaaaatgcttctagag
gaattgataaagtttgcaatgatgcatggagggccaaggcacataaatgtggtagatgct
gttgttgctaatgcaatatctcctgggactgatgtgtctcaaggtttgagtgctaaagat
ggggagtatatatcaagattatatttagagtttgttgacctctgtggaactatctatgac
gtaaagaaggcatggaatcgtcacataaagttgtttccccactgtttgaggactatgtcc
atatataagtacccagcaacgagttcaaaacccttgagaatagctatggaaggaagacca
gacatcatcgctgcaatgccttgtcatccatttggagattctggttctgaccatttggcc
ctgatcccaatagaagagcaaggactgtcatgcccagaaaatcatgatatccactctgag
caggttgtcaatgtccagcttgaaccagaagcagctaacaaaagtgcacaggagggattg
caactggtcattcccaaagttccagggcagcacagagaagaggcttctgaaccaaatgtg
tcagattccgtggttaaagaatataatgaaatcgaatctgtacaagccttgttagcattg
tccagagcaaatgatcttcagcaagaggttgagcatgaacctttacaggacccgaagtct
ctttcactggagtgtctctctttgaatcctcaaggcaaggaatctcccgaatcaatccct
gcatcatctcatgaggttgaagctcctgaagaagcatgcagatcaaatggaatcataact
gagagtgtgtacaatactgatgaaaaccccccttcttccagcccagtaggcacttcagct
gatgatcctgctgaaattcacagtgaatcagtgggtcctttgtcttcagctagtcctcag
cttcctacaccaacagaagaattgtcacaatccctggtgcctaaaagtggtggtggaaaa
tggaatcaaacggatggtactgataaatatgctcaaattcaaatgtctccagaaagacat
aaaaatcctccaccatcagaagcagttccacacccacagttgtctgtaaatggtgctgga
aattggcgtcaaatgaacaatgctgataaagttcacagagattccagtcctaggttccat
gggcattcacgaaacaaaaggcgtgcctcccggcatgttcctctggaacaacagtaccca
cgagatcaaataggcactcaaatgcttgtgagccaaggtaatcctggtcagcctttttct
tggcaaaaccaacaaaatcagcaagggagccaagcacaacatccaattcaaactgctggc
cagggcaatttgacagctactcatgcttggccaatgcaaattgtgcagcaacaaaacttt
gcctctgcatcttcatgtcaagtgccagcccaacctgttactcaagcacaggtgtctcaa
tatcccatgcaaagtaatgagcagtatgggcatatgcagaatagccaagcatataatcag
atgtggcattattattactaccagcagcagcaacattttattcaacaacagcaactacaa
ttgcagcaacagcctcagcagcagcagcacccacaagagtccgagcaactccagcagcag
cagctgcaaccgtcccagcagccactgtcccagcagctgcaatcccatcaacagcagctt
ttgcaacaacaatatcaacagcagcatctggaactgcaacagcattatcttcagcagcac
caacaacagttccagcatcaacaaaatcatcagcaacagctgcagttgcaacagcaacag
tatgtactgcagcagcaacaatcctatcaacagcagcagcagcaacaacatctgctttac
ttgcagcaactacagcagcaacaacaagaacatgagcctcaaaagcaacaacagcagcaa
caattgcaacagaaagaagatcaagaacagcagcaacaacaactgctgataactccatta
caaattcagcaggcatggaacaactaccaacagcaggcttctttgcagtactatgatgcc
acgagtcattcaggaacggaatcaaatcagcagattatggtaccccagggccagccagcg
actccacatagtaccagttcatctgaacatgcagcatcaccgggtgtccaacaacaatct
ccaaaattaatgaaacagacggatgataattcccccattaactcagtgtag

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