Vitis vinifera (wine grape): 100243602
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Entry
100243602 CDS
T01084
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100243602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100243602
Spliceosome [BR:
vvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100243602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
PRP4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
Beta-prop_RIG_2nd
WD40_RFWD3
eIF2A
WD40_like
Motif
Other DBs
NCBI-GeneID:
100243602
NCBI-ProteinID:
XP_059595239
LinkDB
All DBs
Position
8:complement(join(21034324..21034418,21035030..21035111,21035221..21035418,21035549..21036002,21036641..21037545))
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AA seq
577 aa
AA seq
DB search
MDVDEENPVSVSLAEPSAAVTDDQTPVSTIDPTPLPAMQPIIPSLVPPPIVPPIAPIPSV
SAPILRPLAPLPVRPPVLRPPLPQNGEMRASDSDSDRDDSGRAQAASGSAVEYEISEESR
QFRERQEKAKQEFLMKRRASALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIM
AKLDAEGQLEKLMKAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAKYSIK
RAASRLYRARRKRDDPDEDLDAEMDWVLKEAGSLVLDCSEIGDDRPLSGCSFSHDGKLLA
ACALSGVAKIWSMPQVNKVSALKGHTERATDVAFSPALNHLATASADRTARLWNSEGSLL
KTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGISFHRD
GSLAASCGLDALGRVWDLRSGRSILALEGHVKPVLGICFSPNGYHLATGAEDNTCRIWDL
RKKKSLYVIPAHSNLVSQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVT
SLDITEDGHCIATVSHDRTIKLWSSAEIEKEKAMDID
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagacgaggaaaaccctgtttcagtttcacttgcagaaccttctgcggcagtc
actgatgatcaaactccagtttcaaccattgatcctaccccactaccagcaatgcaacct
attataccttcattagtcccccctccaattgtgcctcctattgctcccataccctcagtt
tctgccccaatcctccggccattggctcctctccctgtgcgtccacctgtccttaggcca
ccccttccacaaaatggtgagatgagagccagtgattcagattctgatcgtgatgactca
ggccgtgcccaggcagcttcaggttcagctgtagaatatgagatttcagaagagagcaga
cagtttagagagcggcaagaaaaagcaaagcaggaattcttgatgaagcgtcgtgcttct
gctctagcagtgcctactaatgacatggctgtacggactcgccttcgccggcttggtgaa
cccataaccctttttggagaaagagagatggaaagacgagatcggctgaggatgattatg
gcaaaactggatgccgaggggcaattggagaagctgatgaaagctcatgaggaggaggag
gctgcagctcctgttgcaatggaagaagttgaagaggaaactcttcagtacccattctat
actgaaggttcaaaatctcttttagaggctcgagttgagattgctaagtattcgattaag
agagcagcttcacgtctttaccgtgcaaggaggaaaagggatgatccagatgaagatttg
gatgcagagatggattgggttttgaaagaggctgggagtttggtcttagattgcagtgaa
attggagatgatcgaccactttctggatgttctttctcacatgatggaaaactgcttgcc
gcctgtgctctaagcggagttgctaagatatggagcatgcctcaagtaaataaggtctct
gccctaaagggacatacagaacgtgcaactgatgttgcattttctcctgcactcaaccat
ttagcaactgcctctgctgaccgaactgcaaggttgtggaattctgaagggtctcttctg
aagacatttgagggccatctggaccgtcttgcccgcatcgcctttcatccatcagggaaa
tacctgggcacagctagctttgacaagacttggagattatgggatgtagagactggtgag
gagttgcttcttcaagaaggtcatagtaggagtgtatatgggatatctttccaccgggat
ggatctttagcagcatcatgcggactggatgcacttggtcgtgtatgggaccttcggtct
gggagaagcattcttgcattggaaggccatgttaagcctgttctggggatatgtttttcc
cctaatggttatcatttagccactggtgctgaagacaatacttgtcgaatttgggattta
agaaagaagaaatccttgtatgtaattccagctcactcaaaccttgtttcacaagttaaa
tttgagcctcaagaaggatactttttggtaactgcttcgtatgatatgacagcaaaggta
tggtcagcccgagattttaagcctgttaaaacattatctggacatgaagcaaaagttaca
tctttggatataacggaagatggacattgtattgcaactgtgtcacatgatcgaacaatt
aagttgtggtcatctgcagaaattgaaaaggagaaggctatggatatagactaa
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