KEGG   Vitis vinifera (wine grape): 100243694
Entry
100243694         CDS       T01084                                 
Name
(RefSeq) WD repeat-containing protein PCN
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100243694
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vvi03009]
    100243694
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    100243694
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR90_POC16_2nd WD40_Prp19 Beta-prop_EML_2 Beta-prop_HPS5 WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR11_1st WDR54 DUF4881 Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 100243694
NCBI-ProteinID: XP_002285395
LinkDB
Position
18:join(7404829..7404990,7405084..7405227,7405821..7406127,7406222..7406285,7406623..7406736,7406824..7406986,7409423..7409558,7409693..7410330,7411147..7411328,7412569..7412829,7413109..7413424)
AA seq 828 aa
MLEAYRNSSLDWNPSPVVALATSVDDSQVAAAREDGSVEIWLVSPGSVGWHCQLTIHGNP
NSRVSSLVWCRSGSKNMPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPY
NDACLTQHELQHVGNGYLNDKLNNAEDEDKETSESEDDDSVELHEVSVFENPRVAMGCDD
GCVRVYSITISDELTYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIY
RITVGLGGLGSGPELCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNA
LAAAPSHNRVFSAGSDGQVILYKLSSSDDTSSKGIKKWIYVSYVRAHTHDVRALTVAVPI
SQEDQLADEKDKRIHCKEKTVDKKDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLF
AYSVKEFTKFRPHDICPAPQRVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTD
MGSSSYGALATTDLLVRVKSKASRKIICSTISASGSLFAYSDHVKPSLFELKSAHGRSAW
TVNKRQLPQKLPFAHSMVFSCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEES
PPGEPPITRMYTSSDGQWLAAINCFGDVYIFNLEIQRQHWFISRMDGASVTAGGFPPQNN
NVLIITTSSNRVYAFDVEAKQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIV
YSARAMCLIDFGMPVDQEDERDLINSQDSAIIKKLQNSPINGRLKRKLKESGLDTKLNDR
KNFEFCAFRDPVLFVGHLSKNSLLIIDKPWADVVRTFSAPVHRHIFGT
NT seq 2487 nt   +upstreamnt  +downstreamnt
atgctcgaggcttatcggaatagctcgttagattggaatccctccccagttgtagcccta
gcaaccagcgtcgacgactcgcaagttgccgccgctcgggaagacggttccgttgagata
tggctcgtctctcccggctccgtcggctggcattgtcaactgactatacacggaaaccct
aattccagagtttcatcgcttgtttggtgtcgctctggttcgaaaaacatgccttcaggt
cgtttgttttctagcagtattgatggatcagtttcagagtgggatcttttcgacttgaag
caaaagattgtgttagattcaattggggtctcgatatggcagatggctgcagcaccttac
aatgatgcatgtcttactcagcatgagttacaacatgtcgggaatggatatttaaatgat
aaattaaataatgcggaggatgaagataaggagaccagtgaaagcgaagatgatgattcg
gttgaactccatgaggtatcggtctttgaaaatccacgtgtagcgatgggttgtgatgat
ggttgtgtgcgagtatacagtattaccatttcagatgagttaacttacaataaatcattg
cctagggtcagtgggcgaatattaagcgtgacatggagtcccaacgcaagtatgatatac
tcagggagtagtgatgggtttataagatgctgggatgctaaattggctcatgagatttac
agaataacagttgggcttggagggttagggagtggaccggaactttgtatatggtcatta
cttgccctgaggtgtggtacactagttagtggagatagcaatggtagtgttcagttttgg
gacagtcagcacggaactcttttgcaggcacattctttgcacaagggtgatgtcaatgct
ctggcagcagcgcctagtcataacagggtgttctctgctggttctgatggtcaggttatt
ctttataaactctctagtagtgatgacacttcttcaaaggggataaagaaatggatctat
gttagttatgtaagagctcatacgcatgacgtcagggccttgacagttgcagtacccatc
agccaagaagatcaattggccgatgaaaaggataaaaggattcattgtaaagaaaagacc
gttgataaaaaggataaaagaattcgtcgtaaagaaaagcctgttgactttagttatcat
aaatgggcccacctgggggttcccatgctagtatcagcaggtgatgacacgaagcttttt
gcttactctgtcaaagagttcacgaagttcaggccacatgatatttgccctgcacctcaa
agagtagcaatgcaattggttcttgatactgatgtcaataaaatgcctttgcttctagtc
caggcttcttattggttagatattctatgtattcacacaaaaagtggttctgttactgat
atggggtctagctcttatggggcccttgcaacaacagatctgctggttcgagttaagagt
aaggcatctcggaagatcatttgcagcaccatttctgcttcagggtcgctttttgcatat
tctgaccatgtaaaacctagcctctttgaattgaaaagtgctcatggtaggagtgcatgg
actgttaataaaaggcaacttcctcaaaaactcccattcgcccattccatggtttttagt
tgtgattcttctcggttgatgatagcagcttatgatagacggatatatgttgtggatgtg
ggaagctcagagctagtacataccttcacaccctatagtgaggagcatgatgaggaatct
cctcctggtgagcctccaataacaagaatgtatacaagctctgatgggcagtggttagct
gccatcaactgctttggggatgtctatatatttaatctggagatacaaaggcagcattgg
ttcatatcaagaatggatggtgcctctgttactgcaggaggttttcctcctcaaaacaac
aatgtgctcataatcacaacgtcttcaaaccgggtttatgcatttgatgtggaggccaaa
cagttgggagaatggtcaatccagcacacatttgttctgcccaggagataccaggagttt
cctggggaagttattgggctttcatttccaatatcttcaagttcatccacagttattgtt
tacagtgccagggcaatgtgcttgatcgactttgggatgccagtggatcaagaagatgag
agagatttgataaatagtcaggattcagctatcatcaagaagttacaaaattcacccatt
aatggacgtctgaaacgtaagttgaaagaaagtggtttagatactaaactcaatgataga
aagaattttgaattttgtgctttcagagatcctgtattatttgttggacacctttcaaaa
aattccctcttgatcatagacaaaccatgggcggacgtggttagaactttcagtgcccca
gttcacagacatattttcgggacataa

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