Vitis vinifera (wine grape): 100243734
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Entry
100243734 CDS
T01084
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vvi01009
]
100243734
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100243734
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
100243734
Protein phosphatases and associated proteins [BR:
vvi01009
]
HAD phosphatases
Fcp/Scp phosphatases
100243734
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
100243734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
100243734
NCBI-ProteinID:
XP_010656786
UniProt:
A0ABY9BGH6
LinkDB
All DBs
Position
1:join(27026184..27026833,27026984..27027131,27027233..27027288,27027387..27027447,27027530..27028975,27029589..27030161,27030252..27030398,27030488..27030756,27030862..27030973,27031064..27031321,27031700..27031746,27031818..27031881)
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AA seq
1276 aa
AA seq
DB search
MLVVGSNRFVLNNNLKEQETLNRMGIEDVEEGEISDSASVEEISEEDFNKQEVRVLREAK
PKADTRVWTMRDLQDLYKYHQACSGYTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSS
SSNTSRDDSSSAKEVAKVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSEPDVKDEGG
VLDVNEPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEK
VVGESSVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSI
QHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLS
LDSISVESYNQNNPDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNK
SELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYG
DISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSGPHLDSS
VVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVD
PLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQM
MNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQSLLKDIA
VNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGALQ
VPQTGPMNPQDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKTNAQKQEDQTETKSVP
SHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQVNTDRMDVKATVSD
SGDQLTANGSKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSA
RKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKLRPG
IWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDERVP
KSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDH
DERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKILAGCRIVFSRVFPVG
EANPHLHPLWQTAESFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS
ALLYRRANEQDFAIKP
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcttgttgttggatctaatcgatttgtgttgaacaacaatcttaaagaacaagaaacc
ctaaataggatgggaattgaagatgtggaggaaggtgagatttctgattctgcttccgta
gaggagatcagtgaggaggattttaataagcaggaggttagggttttgagagaagcgaaa
cctaaggctgatactagggtttggacgatgcgagatctgcaggatctgtataagtaccac
caggcttgcagtggttacactccaagattgtacaatttagcctgggcacaggctgttcag
aataaacctcttaacgatatttttgttatggatgatgaggagtcgaagcgatcttcgtcg
tcttcgaacactagcagagatgacagcagttcggcgaaggaggtggctaaggtgataatt
gatgatagtggcgacgaaatggatgtgaagatggatgatgtgagtgagaaagaggaaggt
gaattggaggagggtgagattgatttggattcggagccagatgtgaaagatgaaggaggg
gttttggatgttaatgagcctgagattgacctgaaagagagggaattggtggagcgagtg
aaatcaattcaggaagatcttgaaagtgtaactgtgattgaagcggagaaatcattttct
ggggtatgttcccgactgcagaacactttgggaagtttgcagaaagtgtttggggagaaa
gtggttggggagagcagtgttccaactaaagatgctctcgctcaacaattgattaatgca
attcgagctcttaatcatgtattttgttccatgaattctaaccaaaaggaactgaacaag
gatgttttctcaaggttgctttcttgtgtagagtgtggagattctcctattttctccatt
cagcacattaaagaggtagaggtcatgatgtcctttttggatactcctgcggctcagtca
agtgctgaagctagtgataaggttaatgacgtccaggtcactgatggaatgaatcggaac
attcttgatagttcagttgaaagttctgggcgtgcttttgcttctgcaaagaaattgtca
ttagattccatatctgttgaatcttataatcaaaataacccagatgctttgaaaccagga
ctatctagcagtagggggagatttatttttggtccccttctagatcttcacaaagatcat
gatgaagacagccttccatcacccactgggaaagccccacaatgttttcctgtaaacaag
tcagaattggtcacagctaaagtggcacatgagacgcaagattctataatgcatccttat
gaaactgatgctctcaaagctgtttctacctatcaacagaaatttgggttgacttcattc
ctcccaattgacaaacttcctagcccaaccccttcagaagaatctggtgatacatatggt
gatatcagtggagaggtttctagttcttcgactattagtgctcccataactgcaaatgca
cctgcattgggtcatcctattgtctcttctgctcctcagatggatagttccattgttcaa
ggaccgactgttggtaggaacacttcacttgtgagttctggcccccacctggatagttca
gttgtgcaaggactagttgtcccacggaatactggagctgtgaattctaggtttaattcc
attttaagagcatcagcaaagagtagagaccctaggcttcgattggcgagttctgatgct
ggatctttggatctcaatgaacgtcccttgcctgctgtgagcaattctcctaaagtggat
cccttgggagaaattgtaagctcaagaaagcagaaatctgctgaggaacctcttttggat
ggtcctgtaacaaaaaggcaaagaaatgggttgacaagccctgcaactgttagagatgca
caaactgtggttgcaagtggaggctggttagaggatagcaatactgttatacctcagatg
atgaacaggaaccagttgatagagaacactggaacagatcctaagaaattggaaagtaaa
gtgactgtcactggtattggttgtgataaaccttatgtaacagttaatggaaatgagcat
ttgccagtggttgctactagcaccactgcttccttgcagtctttattgaaagatattgct
gtgaatccagccgtgtggatgaatatatttaataaggtggagcaacagaaatctggtgac
cctgcaaaaaatacagtgcttcctccaacctcaaattcaatactgggagtagttccaccc
gcaagtgttgctccactaaagccatcagcccttgggcagaaaccagcaggcgcacttcag
gttcctcaaactggtccaatgaatccacaggatgagtcaggaaaagtccgcatgaaacct
cgcgatcctcgccgtattcttcatgccaattcgtttcagaggagtgggagttctggatct
gagcagttcaaaacaaatgcccagaagcaagaggatcaaacagagacgaagtctgtgcct
tctcattctgttaatcccccagatatttctcagcaattcaccaagaatctgaaaaacatt
gctgatctaatgtctgcttcccaagcatcgtcaatgactccaacttttccgcagattctt
tcttcccagtcagttcaagtgaacacagataggatggatgtaaaagctacagtttcagat
tctggtgaccagctaactgcaaatggttcgaagcctgaaagtgcagcaggtccccctcaa
tcaaagaatacatggggggatgttgaacatctatttgatggatatgatgaccagcaaaaa
gctgccatccagagagagagagcaaggaggatagaagaacagaagaaaatgttttctgcg
cgcaagctctgcctcgtcttggatctagatcacacactccttaattcagccaagtttgtc
gaagtagatccagtgcatgatgagatcctaagaaagaaggaggaacaggatcgggagaag
tcacagaggcatctcttccgttttcctcatatgggaatgtggaccaaattaaggccaggg
atctggaatttcttggagaaggctagtaagctttatgagctgcatctttacacaatgggg
aacaagttatatgctacagagatggcaaaagttcttgatccaaaaggggttttattcgct
ggacgagtgatctctaagggtgatgatggggatgttttagatggtgatgagcgagtccct
aagagtaaggatttggaaggggtattgggtatggaatcagctgtggtgatcatagatgat
tctgtgagagtctggccacataacaaattaaacttgatagttgtggaaaggtacacttat
tttccatgtagtagacgccaatttgggcttcctggcccgtctcttcttgagattgatcac
gatgagagaccagaagatgggactttggcatcctctttggcggttattgagaggatacat
cagagctttttctctaatcgagccttggatgaggtggatgtcagaaacatcctagcctca
gagcagcgtaaaattcttgctggttgtcgtatagtcttcagcagggtgtttcctgttggg
gaagccaaccctcacctacatcctttgtggcagacagctgaatcttttggtgccgtgtgc
accaaccaaatagacgaacaggttactcatgtagttgccaattctcttggaacagataag
gtgaattgggctctttccactggaagatttgtggtgcaccctggctgggtggaagcatcg
gctttgctatatcgaagggccaatgagcaagattttgccattaaaccataa
DBGET
integrated database retrieval system
