Vitis vinifera (wine grape): 100243776
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Entry
100243776 CDS
T01084
Name
(RefSeq) serine/arginine-rich splicing factor SC35
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100243776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100243776
Spliceosome [BR:
vvi03041
]
Common components
Common spliceosomal components
SR proteins
100243776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
RRM_3
Motif
Other DBs
NCBI-GeneID:
100243776
NCBI-ProteinID:
XP_059590325
LinkDB
All DBs
Position
18:complement(join(4350320..4350325,4350429..4350615,4350712..4350918,4351006..4351077,4351801..4351867,4351957..4352036,4352168..4352246,4352333..4352408))
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AA seq
257 aa
AA seq
DB search
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFA
FVRYKYADEAQKAVEKLDGRNVDGREIMVQFAKYGPNAERIHKGRIIETSSKSKGRSRSR
SPRPRHRDEYRDRDYRKRSRSRSRGRNDRDRYRGKERDSRRRSRSRSASPDHHKDRGRGR
YDDERRSRSRSYGSASPARRSPSPRGSPSPRRTPPSREESPVGRKRNERSPTPKSVSPRG
RPADSRSPSPHNSDADE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacttcggacgatccggtcctccggacatcagagatacctattctttactcgtt
ctcaacatcactttccgcaccaccgcagatgatctgttcccgcttttcgacaagtacggg
aaagtcgttgatgtattcatccccagagatcgaaggaccggtgactcgaggggatttgca
tttgttcgttataagtatgcggatgaggcccagaaggcggtagaaaagcttgacggaagg
aacgtggatggaagagaaattatggttcaatttgccaagtatggtcccaacgcagagcga
attcataaagggaggataatagaaacatcttcaaaatcaaaaggcaggtcaagaagccgc
agtcctcggccaaggcatcgggatgaatacagggacagggattacaggaagagaagtcgc
agcagaagtagaggcagaaacgatcgtgacaggtaccgtgggaaggaaagagatagtcgc
cgtcggagcagaagccgcagtgcaagtcctgatcatcacaaggatcgtgggagaggcaga
tatgatgatgagcggcgtagtcgcagccggtcatatggaagtgcctctcctgcccggcgt
agccccagtcctcgagggagcccctctccacgcagaacaccaccttccagggaagaaagt
cctgttggacgcaagagaaatgaacgttcacctactccgaaaagtgtctcaccccgtggt
cgacctgctgattctcgaagtccatctccacataattctgacgctgatgaatga
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