KEGG   Vitis vinifera (wine grape): 100243779
Entry
100243779         CDS       T01084                                 
Name
(RefSeq) pre-mRNA-processing protein 40A
  KO
K12821  pre-mRNA-processing factor 40
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100243779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100243779
Spliceosome [BR:vvi03041]
 Complex A
  U1 snRNP components
   U1 related factors
    100243779
 Complex B
    100243779
SSDB
Motif
Pfam: FF FF_PRPF40A WW WW_TCERG1
Other DBs
NCBI-GeneID: 100243779
NCBI-ProteinID: XP_010664484
UniProt: A0ABY9DSQ6
LinkDB
Position
18:join(7091659..7091691,7092241..7092306,7092404..7092742,7092836..7093021,7105251..7105324,7105552..7105621,7109780..7109832,7109961..7110018,7110096..7110469,7110580..7110640,7110980..7111078,7111173..7111241,7111347..7111424,7111606..7111692,7111786..7111820,7111949..7112054,7117016..7117096,7117183..7117275,7117342..7117395,7117479..7117595,7118012..7118110,7119770..7119817,7119907..7119999,7123847..7123954,7124078..7124142,7124228..7124330,7127360..7127665,7127760..7127897)
AA seq 1030 aa
MANNPQSSGAQPLRPPAVGSMGPQNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQN
ISSPNVGGPSGQNQPPQFSQAMQQLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSSPQP
NQTAPPLNSHMPGLAGPGMPFSSSYTFAPASFGQPQSTINASAQFQPISQMHAPVGGQPW
LSSGSQSGALVTPVHQAGQQPSVTADIPAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKT
RLSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAE
KSVSQETQSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAV
VNPPPVVVSGTSAIPIAQSAVTTSAVGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTS
FENLSADATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKAL
LESANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKA
REEFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTK
ALEEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDL
EREEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLA
VASNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDV
GSPNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKP
LFEESQEYRSIGEESFGREIFEEYIAHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKE
RKEKDRDREREKGKERSRKDETESENVDVTGSYGYKEDKKREKDKDRKHRKRHQSAVDDA
SSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSRRNGGYEELED
GELGEDGEIR
NT seq 3093 nt   +upstreamnt  +downstreamnt
atggccaataatcctcaatcttctggggcacagccacttcggcctcctgcagttggatcc
atggggcctcaaaattttggtccaccattatctatgcagtttcgacctgcggttccggga
caacaaggacatccgttcattccagcagcttctcaacaatttcggccaattggacaaaat
atttcttcaccaaatgtgggagggccttctggtcaaaatcagccgccgcagttttctcaa
gctatgcagcagttaccacctaggccaaaccagcctggtcccattgcaccttcatcacag
ccaattcccatgccatacattcagcaaaacagacctcttacttccagctcgccgcagcct
aatcaaactgctccccctttaaatagtcatatgcctggtctggctggcccaggaatgcct
ttctcatcatcgtatacttttgcaccagcttcttttggccagccacaaagtactattaat
gcatcagcgcagtttcaaccaatatctcaaatgcatgcacctgttgggggacagccttgg
ttgtcatctggaagtcagagtggtgccctagttacaccggttcatcaggctggccaacag
ccttctgttactgctgacattccagcgggaaatgttcctaacccaactcatcaatcctca
tctgattggcaagagcacacatcagctgatggaagaagatattactacaacaagaagaca
agactttctagttgggaaaagcctttggaattaatgactccaattgagagggctgatgcg
tcaactgtttggaaggaattcacaactccagaaggaaggaaatattattacaacaaggtt
acaaagcaatctaaatggacaatacctgaagaattgaagttggctcgagaacaggctgaa
aaatcagttagccaggaaactcaatctgaaatgggtacaacttccaatgaacctgctgtt
gttgctgtctccttggccgaaacaccatctactgcatcagtttcggttagctctaccact
tcttcgacaatatctggaatgacttcaagcccagttccagttacacctgttgttgcagtt
gttaaccctcctcctgtggtggtttctggaacatcagccattccaattgcacaatctgct
gtaacaacaagtgcagttggagttcagccttctatgggaacccctttacctgctgctgtt
tctggaagtactggggttgctgctgctttcatcaatcctaacgccacatcaatgactagc
ttcgagaatctatcagctgatgctacaaatggagcttcaatgcaggatatagaggaggca
aaaaaaggagtggcagttgcaggaaaaattaatgtgactccgctagaggagaaaacactt
gacgatgaacctttggtatactctactaagctggaggcaaaaaatgcattcaaagcgctc
ttggaatctgcaaatgttgagtctgactggacttgggatcaggcaatgaaagcgataatt
aatgacaagagatatggtgccctgaaaacacttggtgagcggaagcaagcatttaatgaa
tacttgggtcaaaggaaaaaaattgaggctgaggagaggcgcatgaggcagaaaaaagcc
cgggaagagtttacaacaatgctggaagagtgcaaggaactcacatcatccataaaatgg
agcaaagctgtagatatgtttcaagatgatgaacggttcaaggctgttgaacggtctagg
gaccgtgaggatctttttgaaaacttcataatggaacttcagaaaaaggaaaggacaaag
gcgcttgaggagcagaagcggaataggatggagtacaggcaatttcttgaatcttgtgac
tttattaaggtgaacagccagtggcggaaagttcaagatcgcctggaggatgatgaaaga
tgctcccgacttgaaaaaattgatcgcttggagattttccaggaatatattcgtgaccta
gagagagaagaagaggaacagaggaagatacagaaggaacaattgaggcgtgctgagaga
aagaaccgagatgaatttcggaagctgatggaagagcatgttgctgctggcactctgaca
gccaaaactcactggcgggattattgcatgaaggttaaagattcgtcaccatatctggct
gttgcatccaacacctctggttcaaccccaaaagatctgtttgaggatgttgctgaagaa
ttagagaaacagtatcatgaagacaaagctcgtataaaggatgcaatgaagttaagcaaa
gttacgattgcatcaacatggacatttggagacttcaaggctgctattttggatgatgtt
gggtccccaaacatttcagatgtgaacttaaagcttgtatttgaggagctacttgataga
ataaaggagaaggaagagaaagaagctaaaaaacgtcaacgtcttgctgatgatttcaat
gatctgttgcgctccaaaaaggagataactgcgtcttctaattgggaagattgcaaacca
ctttttgaagaaagccaagaatacagatcaattggggaagaaagctttgggagggaaatc
tttgaggaatacattgcacacttacaggagaaagccaaagaaaaggaacgcaagcgagag
gaggaaaaggccaaaaaagagaaagagagagaggagaaagagaaaaggaaggagaaagaa
aggaaagagaaagacagagatcgtgaaagggaaaagggaaaggaacgatctaggaaggat
gaaacagagagtgaaaatgtagatgtaactggcagttacggctataaagaagataaaaaa
agggaaaaggacaaagatagaaaacatcgaaagcgtcaccaaagtgctgttgatgatgca
agctctgataaggaagagaaagaggagtctaagaaatctagaagacatggaagtgatcga
aaaaaatcaagaaagcatgcatacactcctgaatcagacactgaaagcaggcataaaaga
cacaagagagagcactgggatggttcccgaagaaatggaggttatgaagaacttgaagat
ggggagcttggtgaggatggggaaattcggtag

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