KEGG   Vitis vinifera (wine grape): 100244028
Entry
100244028         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100244028
  KO
K03257  translation initiation factor 4A
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100244028
   03012 Translation factors [BR:vvi03012]
    100244028
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:vvi04147]
    100244028
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100244028
   mRNA cycle factors
    Stress granule specific factors
     100244028
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    100244028
Exosome [BR:vvi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100244028
  Exosomal proteins of bladder cancer cells
   100244028
SSDB
Motif
Pfam: DEAD Helicase_C WD40_Prp19 WD40 WD40_WDHD1_1st WDR55 EIF3I WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 ResIII Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_Nup120_160 AAA_22 Beta-prop_WDR75_1st NBCH_WD40 CMS1 Beta-prop_WDR19_1st DUF2780
Other DBs
NCBI-GeneID: 100244028
NCBI-ProteinID: XP_010656491
LinkDB
Position
11:join(1546009..1546203,1546321..1546352,1546430..1546540,1547200..1547276,1547713..1547758,1547873..1547933,1548639..1548692,1548843..1548923,1553770..1553809,1553974..1554086,1554448..1554558,1555165..1555281,1556046..1556126,1557993..1558113,1559141..1559210,1559352..1559458,1559770..1560200,1560621..1561256)
AA seq 827 aa
MGSDARDWDEDGYRNSILKEREIQTRTVFRAIFAPSQNPNPDVIVVASSDGTLASYSISS
CISQLQSGFGNARPRKSLLGLPVAEPNCFLQGHDGPAYDVKFYGDGEESLLLSCGDDGRI
RGWRWKEITQSEVHIPLQGNHVEPVLDLVNPQHKGPWGALSPVPENNAIAVNAQWGSVFA
AAGDSCAYCWDVEKSKIKMVFKGHSDYLHCIIARNSSNQIITGSEDGTARIWDCQSGKCI
QVIDAKKDKKPKEIFSCVSCIALDASESWLAYGRGRSLSVWNLPACERVTRVSTHASFQD
IVFDDNQILAVGAEPLLSRFDINGVILSQIQCAPQSAFSVSLHPSGVTAVAGYGGVVDVI
SQFGSHLCTFRGRIRGVWETLNRFKIKAQVSLVLSHLSLPISSLALSRSSHLSVMAGVAP
EGSQFDTRNYDAKMTELLSTDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAI
QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEK
VMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMF
VLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD
ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV
SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHR
IGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVADLL
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgggttcggatgcgagggactgggacgaagatgggtatagaaacagcatattgaaagaa
agagagatccaaacacgaaccgtttttagagccatattcgcaccctcacaaaaccctaac
ccggacgtcatcgtcgtggcctccagtgatggaacgcttgcctcctactccatctcctcc
tgcatctctcaattgcagtcgggttttggcaatgctaggcctcggaagtctttgctcggt
ctgccggtggctgaacccaattgcttccttcaagggcatgatgggcctgcatacgacgtc
aaattttatggggacggcgaggaatcattgttattgagttgtggtgatgatggtcggatt
cgtggatggaggtggaaggaaattacccaatcagaggtgcatattcctttgcaaggaaac
catgtggagccggtactggacttggtcaatcctcaacataaaggtccttggggtgctctt
tctcctgttcctgaaaacaatgcaattgctgttaatgctcagtggggatctgtttttgcg
gctgctggtgattcttgtgcatattgctgggatgtggagaagagtaagataaaaatggtc
tttaaggggcattcagactatttgcactgtatcattgctcgtaactccagcaatcagatc
ataactggttcagaggatgggactgcacgaatatgggattgccagagtggaaagtgcatt
caagtaattgatgcaaagaaggataagaagcctaaagaaattttctcttgtgttagttgc
attgctcttgatgcaagtgagagctggttggcttatggtaggggtcggagtttatctgtc
tggaatcttcctgcttgtgaacgtgttacaagggtctcaactcacgcttctttccaagat
atagtgtttgatgacaatcaaattttagcggtgggagcggaacctctacttagtcgtttt
gacataaatggcgtgattctttcacagatacaatgtgctcctcagtcagccttttcagtg
tccctacatccatcgggtgttactgctgttgctggttatggaggtgtggtagatgttatc
tcccagtttggaagccacttgtgcacgttccgcggcagaatccgaggagtttgggaaacc
ctaaaccgcttcaaaatcaaagctcaagtctctcttgttctctctcatctctctcttcca
atcagctctctcgctcttagtcgatcgtcacatctttcagtcatggcaggcgtagcacca
gaaggatcgcagttcgatacccgtaattatgatgccaaaatgactgagctgctttcaact
gatggacaggatttcttcacatcttatgatgaggtttatgatagttttgattctatgggt
ttgcaagagaatcttctcagaggcatttatgcatatggttttgaaaaaccttctgcaatt
cagcaaagaggaattgttcccttttgcaagggacttgatgtaattcagcaagctcagtca
ggaacaggaaagactgcaactttctgctctggtatcctgcagcagcttgattatgggttg
gtggaatgtcaggccttggttctggcacccactcgtgagcttgcacaacagattgagaag
gttatgcgagcacttggtgactaccttggagtgaaggtacatgcgtgtgttggtgggacc
agcgtccgtgaggaccagcgcattctttcaagcggtgttcatgttgtcgttggcacacct
ggtcgtgtatttgacatgctgcgaagacagtcccttcgtcctgattacattaaaatgttt
gtgttggatgaagcagatgaaatgctctctcgaggtttcaaggatcagatctatgatatt
ttccaactcctgccatcaaaagttcaagttggagtgttctctgccacaatgccacccgag
gcccttgagattacaaggaagtttatgaacaaacccgtaaggattcttgtgaagcgtgac
gagctcacccttgaaggtataaagcagttctatgtcaatgttgataaggaggagtggaaa
cttgagacactctgtgacctttatgaaaccttagccattacccagagtgtcatcttcgtg
aacacccgacgcaaagttgactggctgactgacaagatgaggagccgagaccacacagtc
tcagccacccatggagacatggaccaaaatactagagacattatcatgcgggaattccgt
tctgggtcttctcgtgttcttatcaccactgatcttctggctcgtggtattgatgtccag
caagtctcccttgtcataaactttgatctccctacccagcccgagaactatctccatcgt
attgggcgtagtggacggtttgggagaaaaggtgttgccattaactttgtgaccagggat
gatgagagaatgctgtttgacatccaaaggttttacaatgtggtaatcgaggagctgcca
tcaaatgttgctgatctcctctaa

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