KEGG   Vitis vinifera (wine grape): 100244105
Entry
100244105         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100244105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100244105
   03012 Translation factors [BR:vvi03012]
    100244105
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100244105
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100244105
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100244105
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 AAA_16 nSTAND3 T2SSE ATPase NACHT PhoH ABC_tran Dicer_dimer AAA_30 RsgA_GTPase
Other DBs
NCBI-GeneID: 100244105
NCBI-ProteinID: XP_002277625
LinkDB
Position
17:complement(join(3244327..3244794,3245094..3245204,3245334..3245486,3245634..3245693,3246026..3246334,3247587..3247735,3247873..3247942,3248143..3248346,3252274..3252468,3265425..3265697,3265776..3265943,3267445..3267575,3267647..3267806,3267940..3268128,3271480..3271575,3285523..3285765,3285985..3286072,3286156..3286310,3290404..3290766))
AA seq 1194 aa
MPYPYASIFQGCFRTTMSLKPVPLQFHIRPYHKTPKMFRPLLFTPMRAHVSAGGSLYLRS
VVACSASSGACARSLELDWRQRNVALPYLFHQNSRYGRFAYDDFSEYDSDREVESAQQQQ
MRASTHENIDEWKWKLTMLIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVV
VFSKVPLPNYRSDLDDKRPQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSI
GNSSVTEEGFYEQQEPLTQTSVVMERILKRKSLQIRNQQQDWQESSEGQKMQEFRRSLPA
YKEREALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGAFCSIICTQPRRISA
MSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPSIHIPGFTYP
VRTHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQALRKRKSQIASSVEDALEVANFD
AYSPRTQDSLSCWNPDSIGFNLIEHALCHIVKKERPGAVLVFMTGWDDINSLKDQLEAHP
LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGK
AKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQLPEL
LRTPLQSLCLQIKSLQLGSISEFLARALQPPEPLSVQNAIEYLKTIGALDENENLTVLGR
NLSMLPVEPKLGKMLIFGSLFNCLNPIMTVVAGLSVRDPFLMPFDKKDLAESAKALFSGR
TFSDHLALVQAYEGWKEAERQQSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVEN
NTEACNKWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPK
IPYPWLVFNEKVKVNSVFLRDSTAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPD
LADTYLSLKKELEELIQQKLLNPTLDVHTNNELLSAVRLLVSEDECNGRFVFGRQLPKSS
KQAIKETSAGALLRSGGAGGDNAKGRLQTVLIRGGHQAPVYKTRQLKNNMFRSTVIFNGL
QFAGQPCSSKKLAEKDAAAKALEWLMGERQSSTEDIDHMSMLLKKSKGKRRKRT
NT seq 3585 nt   +upstreamnt  +downstreamnt
atgccctacccttacgcctccatttttcaaggttgtttcagaaccaccatgtctcttaaa
cccgttcctctccaattccacatccgtccttaccacaagacccccaaaatgttcaggcct
ttgctcttcaccccaatgagagcccatgtctctgctggcggttccttgtatctgcgatca
gtggtggcgtgctcggcctcttctggtgcctgtgctcggtccctggagcttgattggcgg
cagaggaatgtggccctgccctatttgtttcatcagaattcgcggtatggtcggtttgct
tatgatgatttttccgagtatgactccgaccgtgaagtagagtcggctcagcagcagcag
atgcgtgcttccacccatgagaacattgatgagtggaaatggaaattaaccatgcttatc
cgcaacaaagatgagcaagaagtggtctcaacagagaaaaaggacagacgtgattttgag
caaatttcagcactggcaaccagaatgggcttatatagctgtcagtattcaagagttgtt
gtctttagtaaagttccgctgccaaattacagatctgatctggatgataagcgtccacag
agggaggtggtgttaccttttgggttgcaaagagaagtacatgctcatcttaaagaatac
ctttctcaaaagtctatgagcagggaaagtttttcagataagaccttgtcaaggtcaatt
ggtaacagcagtgttactgaggagggattttatgagcaacaggagcccttgacacagact
agtgtcgtcatggaacgaatcctcaaacggaaaagtttgcaaatacgtaatcaacaacaa
gattggcaggaatcttcagaaggccaaaagatgcaagagtttcgcagaagtctccctgca
tacaaagagagagaggcattattaaatgccatttcacaaaatcaggtggttgtagtctca
ggtgaaactggttgtggtaagaccacacaactccctcagtacattttagaatctgagatt
gaagctgctcgtggagctttctgtagtattatttgtactcagcctagacgaatatcagct
atgtctgtctctgaaagagttgctgcagagagaggtgaaaaactgggagaatctgttggt
tataaagttcggctggagggaatgaaagggagggacactcgccttcttttttgcactact
ggcatattattgagaagattacttgttgacagaaatttgaagggtgtaactcatgttatc
gtcgatgagattcatgaacgtggaatgaatgaagattttctccttattgtcctaaaagac
ctgcttcctcgtcggccagaattgaggctgattctgatgagtgcaactcttaatgctgag
cttttttcctcctactttggtggtgctccaagtatccatattcctgggtttacgtaccca
gtacgaactcattttctggaaaatattctggaaatgactggatatagattgactccttat
aatcaaattgatgattatggtcaagaaaaggtgtggaaaatgcagaaacaagctctcaga
aagagaaagagccaaattgcttcctcggttgaggatgcacttgaagttgctaattttgat
gcatatagcccacggacacaagactctttatcctgttggaatcctgattctattggtttt
aaccttatcgaacatgctctttgccacatagttaaaaaagaaagacctggtgctgtcttg
gttttcatgactggttgggatgacataaattctttgaaagatcagctcgaagctcatcct
ctcttgggagatccaagcagagttttgctgcttgcatgccatggttccatggccagctca
gagcagaggttaatatttgataagccggaagatggagtaaggaaaatagttcttgctacc
aacatggctgagactagtatcaccattaatgatgtggtttttgtggtcgattgtggaaag
gcaaaagagacgtcatacgatgctctgaataacactccttgtttacttccttcttggatc
tcaaaggcttctgctcgacaaagaagaggaagagcgggtcgtgtacaacctggtgaatgt
taccatctgtatccaaaatgtgtatatgatgctttttctgattaccaattgccagaactt
ctaaggacacctttacagtccctttgtttgcaaatcaagagtttgcaacttggaagtatt
tcagaattcctggccagggccttgcagccaccagaacccttatcggttcaaaatgccatc
gagtatttgaagaccattggggctttagatgagaatgagaatttgacagtgttaggacgc
aacttgtcaatgcttccggttgagcccaaacttgggaaaatgctcatatttggttctctt
ttcaactgtctgaatccaataatgactgttgttgctggtcttagtgttagagatccgttc
ttgatgccatttgacaagaaggatcttgcagaatcagcaaaagctcttttctcaggccgc
accttcagtgaccatcttgcacttgtccaagcctatgagggctggaaagaggctgaaaga
cagcaatctggatacgagtactgttggagaaatttcctttctgcacaaactctaaaagct
attgattcccttcgaaggcaattcttttatttgctcaaggatgctggtctggttgaaaac
aacacagaagcatgcaataagtggagccatgatgagcatctcattcgagcagtcatttgt
gcaggcctgttccctgggatatgctctgttgttaacaaggaaaaatcaatatcattgaaa
acgatggaggatggtcaagttcttctgtactcgaattcggtgaatgcccgggaacctaaa
attccatacccgtggttagttttcaatgaaaaggtgaaggtgaattcagttttcctccgt
gattccactgctgtatctgattctatgcttcttttatttggaggacgtatttccagaggg
ggaattgatggacacctgaaaatgttgggaggatatttggagttcttcatgaaacctgac
ttagcagatacatatctgagcctcaagaaagagcttgaagaactaattcaacagaaactt
ctgaatccaacactggatgtacacaccaataatgagctgctatctgcagtaagattactg
gtttcagaggatgaatgcaatggcaggtttgtctttggccgccagttgcctaagtcttca
aaacaggcgataaaagagacctcggctggtgcactcttgagaagtggtggagctgggggt
gataatgcaaagggtaggctgcaaactgtacttatcaggggtggacatcaggcaccagtc
tacaagacgagacaactgaaaaataacatgttccggtccactgtgatcttcaacggattg
cagtttgcggggcagccttgcagcagtaagaaacttgcggaaaaggatgcagcagccaaa
gctctggaatggttgatgggcgagagacaatcatccactgaagacattgaccatatgtca
atgcttctaaaaaagagcaaagggaaacgtcggaagagaacttaa

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