Vitis vinifera (wine grape): 100244277
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Entry
100244277 CDS
T01084
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vvi04131
]
100244277
04121 Ubiquitin system [BR:
vvi04121
]
100244277
Enzymes [BR:
vvi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100244277
Membrane trafficking [BR:
vvi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
100244277
Ubiquitin system [BR:
vvi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100244277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-C3H2C3
VPS18_RING_C
amfpi-1
CxC4
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
100244277
NCBI-ProteinID:
XP_019077454
LinkDB
All DBs
Position
8:complement(join(16090620..16091717,16091837..16092256))
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AA seq
505 aa
AA seq
DB search
MRYCIHIFTSFVNITLAEACSPTPLPNSRYCHYVSKHNKRRVLTVRILQDSLKALDLHSP
SSSPLCLSVGAVNFLHQLGFFSHFCISWLFDFCLRFGLFWLKSVESELREISRKGNNPRF
RSILNLDIDLLDAEDRSIREMMAASGSSFWCYRCNRFIRVWAQDAILCPDCGSGFVEQIN
NLSRSPRRRRLPGSAMYLENRNALDQDPVPRIRRARRSGGDRSLFNPVIVLRGSADVNGS
EGGGTSGERGNFELYYDDGTGSGLRPLPASVSEFLMGSGFDRLLDQLAQLEINGAGRCEH
PPASKAAVESLPTIKIVASHVLSESHCAVCKEPFELDSEARELPCKHIYHSDCILPWLSL
RNSCPVCRHELPTDSHEGGSSGHLQSPGLTEEDNVGLTIWRLPGGGFAVGRFTGGRQAAE
RELPVVFTEMDGGFNPSGASRRNPWVASGIRSREGGGFGRVMRNFLSVFGRFRISSSRSS
QETGSRQGSHPETVFERSSRRHNQS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagatattgtattcacattttcacatcgttcgtgaatataacgctggctgaagcctgt
agcccaacgccgttacccaactcacgttattgtcattatgtctccaagcataacaaacgg
cgcgttttgaccgttcggatcctccaggatagcttaaaagccctcgacctacattcaccc
tcgtcctccccactttgtctctctgtgggagcggtaaattttctccaccaattagggttt
ttttcccatttctgtatttcttggctatttgacttctgcctgagatttggactgttttgg
ttgaaatctgtggaatctgaattgcgagaaatttcaagaaagggaaataaccctaggttt
cgttcgatcctcaacttagatattgatttgcttgatgcagaagatcgatcgattagagag
atgatggctgcgagtggatcttcattttggtgttacagatgcaacaggttcatcagggtt
tgggctcaagatgcaatcctatgtcctgattgcggttcaggattcgtggagcaaatcaac
aatctctctcgatctccacggcgtcgtcgacttccaggatcggcaatgtacctcgaaaat
aggaatgctttggatcaggatccggttcctagaattcgccgggccaggaggagtggaggt
gatcggtcgcttttcaaccctgttatcgtcctccgcggttctgcagatgtaaatggcagt
gaaggtggcggtaccagtggtgaaaggggaaactttgaattgtattatgatgatggtaca
ggatcgggacttaggccgttgcctgctagcgtgtccgagttcctgatgggttccgggttt
gatcgtcttcttgatcaattggcacaattagaaatcaatggagctgggcggtgtgagcac
cctccggcttcaaaggctgctgttgagtctttgcccaccatcaagattgttgctagtcat
gttttgagtgagtcccattgtgctgtgtgcaaagaacctttcgaacttgactcggaggct
cgtgagttgccatgcaagcacatttaccattctgattgtatccttccttggctctctctc
cgtaattcttgccctgtttgccgccatgagttgcctacggattctcatgaaggtggaagt
tcaggacatctgcagtctcccggtctgacagaagaagacaatgtggggctaacaatatgg
agactccctggtggtggttttgcagtaggaaggtttactggaggaagacaagctgcagaa
cgtgagcttcctgttgttttcacggaaatggatggcggatttaatcccagtggtgcttcc
agaaggaatccgtgggttgcaagtggaataagatcaagagagggtggtggattcggacgt
gttatgcgcaatttcttatctgtttttgggaggtttagaatttcatcctctcgatctagt
caagaaactgggtctaggcagggaagtcaccctgaaacagtgttcgagagatcctcaaga
aggcacaaccagtcttga
DBGET
integrated database retrieval system
