KEGG   Vitis vinifera (wine grape): 100244610
Entry
100244610         CDS       T01084                                 
Name
(RefSeq) ubiquitin receptor RAD23c
  KO
K10839  UV excision repair protein RAD23
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03420  Nucleotide excision repair
vvi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100244610
  09124 Replication and repair
   03420 Nucleotide excision repair
    100244610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:vvi03051]
    100244610
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100244610
Proteasome [BR:vvi03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    100244610
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      100244610
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin UBA_7 Rad60-SLD CUE Rad60-SLD_2 UBA_RAD5A Ubiquitin_2 TECR_N Dsc3_N UBA_3 Ubiquitin_4 Permuted_GreAB-C
Other DBs
NCBI-GeneID: 100244610
NCBI-ProteinID: XP_002283656
UniProt: D7TT38
LinkDB
Position
14:join(21357677..21357742,21359785..21359946,21360496..21360549,21362557..21362630,21362780..21362827,21363159..21363336,21365103..21365252,21365329..21365394,21365482..21365529,21365619..21365725,21365810..21365885,21368228..21368344)
AA seq 381 aa
MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD
ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQAPVVALP
EVIPEPAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTVVRALRA
AYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQAPQGPQTTVASSGPNANPLD
LFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQ
EHQADFLRLINEPVEGEGNVLGQLGTVPQAVTITPEERESIERLEAMGFDRALVLEVFFA
CNKNEELAANYLLDHMHEFEE
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgaagatttttgttaagactctcaagggcactcacttcgagatcgaagtgaaacccgaa
gacacggttgcagatgtgaagaaaaacattgagttggtgcatggtacggatgtttaccct
gctgcacaacaaatgcttatccatcagggaaaagtcttgaaggatgccacaacactggat
gaaaatcaagttgctgaaagtagctttgttgtcattatgctatccaagaataaggtctca
gcgggtggagcctcaaccacatctgctgcacctacaagtcaggcccaacctgtgagttct
tcaccccctacttcaaatcagccatctacagctcctcaagctcctgttgtagccttgcca
gaagttattcctgaacctgcccctgctgtagcgccttctatttcttcagattctgatatc
tatggacaagcagcatccaatcttgttgcagggaataacttagaggtaaccattcaacaa
attcttgacatgggcggaggaagttgggacagggacacagttgtccgtgctctacgtgct
gcatataacaacccagagagagctgttgaatatctatattctggtattcctgaacaagct
gaaggcccacctgcggcccgaccacctgcaagtgggctggctgtgaacctaccaactcag
gctccacaaggaccacagacgacagttgcttccagtgggcccaatgcaaaccctctggac
ctgtttccgcagggtcttcctagtatgggttcaaatgctagtgcgggcaccttggatttc
cttcgcaacagtccacagttccaagcattgagagccatggtgcaagcaaacccccaaatc
ttgcagcctatgcttcaggagctaggaaagcaaaatccacatctgatgcgactcattcaa
gagcatcaggctgactttctgcgcctgatcaatgaacctgtggaaggagaggggaacgta
ctagggcagctgggaacagtgccacaggcggtgaccatcacacctgaggagcgcgaatcc
attgaacgtcttgaagcaatgggttttgatcgggccctagtgttggaggtgttttttgca
tgcaacaagaatgaggagctagcggcaaactatcttttagaccatatgcatgagtttgaa
gagtga

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