KEGG   Vitis vinifera (wine grape): 100244792
Entry
100244792         CDS       T01084                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi04142  Lysosome biogenesis
vvi04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    100244792
   04148 Efferocytosis
    100244792
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:vvi04131]
    100244792
Membrane trafficking [BR:vvi04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    100244792
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_EML_2 WDR55 zf_RING_Vps8 Beta-prop_WDR3_2nd Beta-prop_HPS5 EIF3I zf_RING_Vps8_fungal Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 TPR_YpiA WDR90_beta-prop_4th Beta-prop_TEP1_2nd PEP5_VPS11_N zf-RING_2 Beta-prop_WDR36-Utp21_1st Rrn7_cyclin_N Beta-prop_WDR11_2nd Beta-prop_IP5PC_F Sigma70_ner
Other DBs
NCBI-GeneID: 100244792
NCBI-ProteinID: XP_002273250
UniProt: A0ABY9C447
LinkDB
Position
6:join(21543301..21543597,21547750..21548019,21548111..21548290,21548497..21548757,21549544..21549676,21549767..21549857,21550905..21551007,21555835..21555938,21556011..21556104,21556356..21556511,21556610..21556672,21556888..21556953,21557903..21558103,21561626..21561703,21561781..21561900,21562046..21562126,21562216..21562301,21567062..21567143,21567245..21567676)
AA seq 965 aa
MKHLTMAPIPSENGVEGDDEREEEEDDSEEEEEEEEVVEEEEEEEEEEEEPRLKYQRMGG
SIPTLLSSDAACCIAIAERMIALGTHDGTVHILDLLGNQVKEFRAHNATVNDLSFDVEGE
YIGSCSDDGYVVINSLFTDEKMKFEYHRPMKAIALDPDYARKTSRRFVAGGLAGHLFFNT
KRWLGYKDQVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPE
ILVPHLVWQDDTLLVIGWGTSVKIASIRANQSNGTNGTYRNVSKSSMNQVDIVASFQTSY
FISGVAPFGDSLVVLAYIPGEEDGEKEFSSTIPSRQGNAQRPEVRIVTWNNDELATDALP
VHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHISWL
LQHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWER
WVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATSPSFHKDLLSTVKSWPPVIYS
ALPVISAIEPQLNTSSMTDTLKEALAEFYVIDTQYEKAFALYADLMKPDIFDFIEKHNLH
DAIREKVVQLMMLDCKRAVPLLILHRDFITPSEVVSQLLDASKKCDSRYFLHLYLHALFE
VSQHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRM
GNSKQALAVIINQLGDIEEAVEFVNMQHDDELWEELIKQCLNKPEMVGVLLEHTVGNLDP
LYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHAI
YLSNEEDEARAKRGDSRASQATERPLSMKTMEVKSKTRGGGRCCMCFDPFSIQNVSVIAF
FCCHAYHMNCLMDSTYSVSGKQGKGATSQETASDYDEYDNSVDGEDDASSGAPRMRCILC
TTAAG
NT seq 2898 nt   +upstreamnt  +downstreamnt
atgaagcatcttacaatggctccgattccgtcggagaacggggtcgagggggacgacgag
agagaagaggaagaggatgattccgaggaggaggaagaagaggaggaggtggtggaggag
gaggaggaggaggaagaggaagaggaagagccgcggctcaagtaccagagaatggggggc
agtattcccacgctgttatccagcgacgccgcgtgctgtatcgcgattgcggagcggatg
atcgcgctcggcactcatgacggcaccgtgcatattcttgatcttcttggcaatcaggtt
aaggaattccgtgctcacaatgctactgtcaatgatcttagctttgacgtagaaggtgaa
tatatcggaagttgttcagatgatggatatgttgtaataaacagcctttttacggatgag
aaaatgaagtttgagtatcatcgcccaatgaaggccattgctctagacccagattatgca
agaaagacatctagaagatttgttgctggtggtttagcaggtcatttattttttaataca
aaaagatggctaggttacaaggatcaggttctacactctggtgaaggtcctatacatgca
gtgaagtggagaacaagtctcattgcttgggctaatgatgcaggtgtaaaagtttatgat
actgctaatgatcagcgtataacatttattgaaaggccgcgaggaagcccacgtcctgag
attttggtccctcacttagtgtggcaggatgatactctcttggtcattggttggggaaca
tctgtgaagattgcttcaataagagcaaatcagtccaatggaaccaatgggacttacagg
aatgtttccaagtccagcatgaaccaggtggatattgtggcgtcatttcaaaccagctat
ttcatttcaggagttgctccttttggtgattctttggttgttctagcctatattcctgga
gaagaggatggagagaaggaatttagcagcaccattccatcacgccagggaaatgcgcaa
agacctgaagtacgcatagtcacatggaataatgatgagcttgcgacagatgccttgcct
gtacatggctttgagcattacaaggcaaaggactattcccttgctcatgctcctttctca
ggtagtagctatgctggtggtcagtgggcagctggagatgaaccattgtattatattgta
tcgccgaaggatgtagttattgcaaaaccaagggatgctgaagatcatatctcttggctc
cttcaacatgggtggcatgaaaaagctttagcagcagttgaagcagggcaagggcggagt
gaactccttgatgaggtgggatcaagatacctggaccatttgattgtggaaaggaaatat
gctgaagctgcatctttgtgtcctaaattgttgcgtggatctgcttcagcatgggaaaga
tgggttttccactttgctcatctccgtcagctccctgttttagttccatacatgccaaca
gagaatccaagattgcgtgatactgcttatgaggttgctcttgtagccctggcaacaagt
ccatcattccacaaggatctattgtcaactgttaaatcttggccacctgtgatttattct
gcattgcctgttatctcagccatagaacctcagcttaatacttcatccatgactgatacg
ctgaaagaggctctagctgagttttatgtaatcgacacacaatatgagaaagcttttgca
ctatatgctgatcttatgaaaccggacatatttgacttcattgaaaagcataacttacac
gatgccattcgtgaaaaggttgtccaactgatgatgctagattgcaagcgtgcagttcca
ttattgatcctacatagggacttcattactccatctgaagttgtctcacaacttctggat
gccagcaaaaagtgtgattctagatatttcttgcatttatatttgcatgcattgtttgaa
gtcagtcaacatgctgggaaggattttcatgacatgcaggtagagctttatgcagactat
gatccaaagatgctgcttccttttcttcgcagcagtcaacactatacactcgagaaggca
tatgaaatttgcatcaaaagggatcttttgagagagcaagtcttcatccttggacggatg
ggaaattcaaaacaagcccttgctgtaatcattaatcaattaggggatatagaagaggct
gtagaatttgtgaatatgcagcatgatgatgaactttgggaagaattaatcaagcaatgt
cttaacaaacctgaaatggtaggtgtgttgttggagcacactgttggtaatcttgatcct
ctctacattgtaaatatggtgcccaatggcttggagatacctaggctaagggatcgccta
gtcaaaattatcactgattacaggactgaaacatctcttagacatggatgcaacgatatt
ctcaaggctgattgtgtaaacctgttggttaaatactataaagaagcaagacatgcaatt
tacttaagcaatgaagaagatgaagcgcgagcgaaaaggggtgacagtagggcttctcag
gcaactgagagaccactgagcatgaaaaccatggaggttaaatcaaaaactaggggaggt
ggaaggtgttgcatgtgttttgatcccttctctatacagaatgtttcggtcatagcattc
ttttgctgtcatgcttatcacatgaactgtcttatggattccacttattcggtcagtggc
aagcaaggaaagggagccacttcccaggaaacagcttcagattatgatgagtatgataac
agtgttgatggtgaggatgatgcctcatctggtgcccctcggatgcgttgtatcttgtgt
actactgctgccggttga

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