Vitis vinifera (wine grape): 100244903
Help
Entry
100244903 CDS
T01084
Name
(RefSeq) histone deacetylase 6
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03082
ATP-dependent chromatin remodeling
vvi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100244903
03083 Polycomb repressive complex
100244903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vvi03036
]
100244903
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100244903
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100244903
HDAC complexes
Sin3A-HDAC complex
100244903
BRAF-HDAC complex
100244903
REST complex
100244903
SHIP complex
100244903
MiDAC complex
100244903
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100244903
Heterochromatin formation proteins
Other heterochromatin formation proteins
100244903
Chromatin remodeling factors
NuRD complex
100244903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100244903
NCBI-ProteinID:
XP_010663108
UniProt:
F6GSI3
LinkDB
All DBs
Position
17:complement(join(11019047..11019086,11025790..11025929,11026057..11026147,11029290..11029432,11029599..11030039,11034179..11034718))
Genome browser
AA seq
464 aa
AA seq
DB search
MEDGIGGASLPSGPDAKKRRVCYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVVHYALHRR
MEINRPFPAGPDDIRRFHSDDYVDFLASVTPDSLHDHAHSRYLKRFNVGEDCPVFDGLFG
FCQASAGGSIGAAVKLNRRDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR
RVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIRDIGVGPGKYYALNVPL
NDGMDDESFRGLFRPIIQKVMAVYQPDAVVLQCGADSLSGDRLGCFNLSVNGHADCLRFL
RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIEPC
NMENQNSPKDLEKIRNMLLEQLSRLPHAPSVPFQTTPPITKVPEEEEEDMDKRPKPRIWN
GEDCESDPDEDEKPRAQFSNTNHHPTSNVEMRGVTGKIKEEKTT
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgggatagggggtgcgtcgctcccgtcagggcctgatgctaagaagcgccgg
gtgtgttacttctatgagcccaccatcggcgactactactacggccaagggcacccgatg
aaacctcaccgcatcaggatggcgcataacttggttgttcattatgcgcttcatcgccgg
atggagatcaaccgcccttttcctgctggtccagatgatatccgacggtttcactcggac
gactatgtggacttcctggcctcagtcacacccgattcgctccatgaccacgctcactct
agatacttgaagcgcttcaatgtcggcgaggactgccccgttttcgacggcctattcggc
ttctgccaggcctccgccggcggctccatcggcgcggccgtcaagctcaaccgccgtgac
gctgatattgctctgaattgggcgggtgggttgcatcacgccaagaagtccgaagcttcc
ggcttttgttatgtcaacgacatcgttctgggtattctcgagctgctcaaggtccacagg
cgtgtattatatgtagatattgacatccaccatggagatggtgttgaggaggcatttttc
accactgacagagtcatgactgtgtctttccacaaatttggggatttctttccagggacc
gggcacattagagacataggggtggggcctgggaagtactatgccctgaatgttccttta
aatgatggaatggatgatgagagttttcgtggtctatttcggcccattattcaaaaagtc
atggcggtttatcagccagatgcagttgttctccaatgtggagctgattctttgtctggt
gataggttgggatgcttcaatttgtctgtgaatggtcatgcagattgccttcgttttctt
agatctttcaatgttcctcttatggtcttgggaggaggagggtatacaatccggaatgtt
gcccgttgctggtgctatgagacggcagtagcagttggggtggaacctgataataaattg
ccttataatgaatattatgagtattttggaccagattatactctacatattgaaccatgc
aacatggagaaccaaaactcgccaaaagatttggagaaaataaggaacatgctactggag
caactttctaggttaccacatgcacccagtgtaccatttcaaacaacaccacctattaca
aaagttccagaggaggaggaagaggatatggataaaagacctaaacctcgcatttggaat
ggagaggactgtgagtctgatcccgatgaagatgagaagcctcgagctcaattctcaaac
accaatcatcatcctacttcaaatgttgagatgaggggtgtcactggaaaaatcaaagaa
gagaaaacaacataa
DBGET
integrated database retrieval system
