KEGG   Vitis vinifera (wine grape): 100244993
Entry
100244993         CDS       T01084                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100244993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100244993
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100244993
Spliceosome [BR:vvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100244993
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100244993
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N AAA_22 DEAD PWI AAA_19 T2SSE AAA_30 nSTAND3 SRP54 ABC_tran
Other DBs
NCBI-GeneID: 100244993
NCBI-ProteinID: XP_002284415
LinkDB
Position
17:join(8035524..8035623,8035750..8035880,8035983..8036201,8036308..8036379,8036676..8036762,8037540..8037573,8037674..8037728,8038646..8038705,8038863..8038934,8041430..8041493,8048950..8049029,8049231..8049298,8049394..8049451,8049660..8049717,8049804..8049872,8050445..8050513,8050706..8050795,8051194..8051280,8051788..8051903,8051985..8052051,8052449..8053489,8053878..8053940,8054500..8054623,8054717..8054817,8055785..8055847,8055935..8056007,8056930..8056979)
AA seq 1056 aa
MGSESNLKVWVSDKLMSLLGYSQPTLVQYVVGLAKQASSPADVVGKLVEFGLSASSETRS
FAEEIFSKVPHKASGLNVYQKQEREAAMLVRKQKTYAILDADDSDEDGGGIVDNRSSTAA
PAASQSEKADTHKKRFRKKTENVEDDADDEVIARAEESRQVKRRTSQDEDDDSELEEESL
RDRREREQLEQNIRQRDAAGTRKLTEQKLSRKEEEEAIRRSNAMEEDDISALRKVSRQEY
LKKREQKKLEELRDDIEDEQYLFDGVKLTEAEQRELRYKREIYDLVKKRSEETDDINEYR
MPDAYDQEGGVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKN
QKSDDYQLVFEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPY
RDELLKAVDDHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQPRRVAAMSVAARV
SQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHER
TLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTK
APEADYLDAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRTRGLGTKIAELIIC
PIYANLPTELQANIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTG
MESLLVNPISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLEDNTVPEIQRTNLANVVL
SLKSLGIHDLLNFDFMDPPPAEALLKALELLYALSALNRLGELTKVGRRMAEFPLDPMLS
KMIVAADNYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKV
YSSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELASNPNDLDAIKKSIT
AGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTEL
KPEWLVEIAPHFYQLKDVEDPGSKKMPRTEGRAVKD
NT seq 3171 nt   +upstreamnt  +downstreamnt
atggggagcgagagcaatttaaaggtttgggtatccgataaattgatgtccttactggga
tattctcagcccaccctggttcaatacgtagttggattggccaagcaagcttcatctcct
gctgatgttgtggggaagcttgtggaattcgggttgtctgcttccagtgaaacgcgttct
tttgcggaagagatcttctcaaaagtaccccataaagcttccgggttgaatgtttatcag
aaacaagaaagggaagcagcgatgctcgtgaggaagcagaagacctatgcaattttggac
gctgatgacagtgatgaggatggtggtggcattgttgacaatcgatcttccactgctgcc
ccagcagcttctcagtctgaaaaagcagatacccataagaagcggttcaggaagaagact
gaaaatgtagaagatgatgcagatgatgaggtgattgcgcgggcagaagaaagtaggcaa
gttaaaagacggacttctcaggatgaagatgatgactcagagttggaagaagaaagtttg
cgtgaccgaagagagagggagcaattagagcagaatataagacaacgggatgcagcaggg
acacgaaagttaacagagcaaaagttgtcgcggaaggaggaagaagaagcaatccggaga
tctaatgctatggaggaagatgacatttcagctttaagaaaagtttcaagacaagaatat
ttaaagaaaagggagcaaaagaaactggaggagcttagagatgatatagaagatgaacaa
tatctttttgatggcgtaaagttgactgaagcagaacagcgtgaactaagatacaaaagg
gaaatatacgatcttgtgaagaagaggtcagaagaaactgatgatataaatgagtataga
atgcctgatgcttatgatcaggaagggggtgtaaatcaggagaagagattttctgtggct
ttgcagcgttatagggactcaagtgcaaatgataagatgaatccatttgcagaacaagag
gcatgggaggagcatcaaattggaaaggcaaccttaaaatttggttcaaaagataaaaac
caaaagtcagatgactatcagttagtatttgaggaccagattgaattcatcaaggcatct
gtgatggatggtgacaagtttgaagatggtttatttgctgagtctcatgatgattctgtc
gcaaaatcagaattagagaaacttcaggaagatagaaaaatgttgcctatctatccatat
cgagatgaattgctcaaagcagtagatgatcatcagattcttgttattgttggggagact
ggttctgggaaaaccacacagatacctcaatatcttcatgaatctgggtacacaaagcgt
ggaaaggttggatgtacccagccacggcgagttgctgctatgagtgttgcagctcgagtt
tctcaggaaatgggcgttaaacttgggcatgaggttggctattctatccgttttgaagat
tgcacgtcagaaaagacggttctgaaatatatgactgatggaatgttattgagagaattc
cttggtgaaccagatctggcaagctacagcgtggtgatggtggatgaggcccatgaaaga
acgctctcaactgatattctatttggattagtaaaggatattgctcgttttagacccgat
cttaagttgcttatttcaagtgcgactcttgatgcagaaaagttcagtgattattttgat
tctgctccaatttttaaaattcctgggaggcggtatcctgttgaaatacattatactaaa
gcaccagaggcagattacttagatgcagccattgtcactgcacttcaaattcatgtgact
caaccacctggtgatattttggtgttcctcactggtcaagaggaaattgaaacagctgag
gaaatcatgaagcacaggacaaggggtttagggacaaagattgcagagctgataatctgc
cctatatatgcaaacctgccaactgagctgcaggctaatatatttgaacccactcctgaa
ggagcacgtaaggttgtcctggccacaaacattgcagaaacgtcattgacaatcgatggg
atcaagtatgtcattgatccaggattctgtaagatgaaatcttataatccacggactggc
atggagtcattactagtaaatcccatctctaaagcatcagccatgcaaagggctggtcga
tctggacgaactggtcctggaaagtgcttccggttgtatactgcctacaactattacaat
gacttggaagataatactgtcccagaaatacaaagaactaaccttgcaaatgttgtgctc
tctctcaagagccttggtatccatgatttgcttaattttgattttatggacccaccacca
gctgaagctttattgaaagccctagaattgctctatgctctaagtgccttaaacagactt
ggggagttgacgaaggtggggagaaggatggcagaattcccccttgatcctatgctctcc
aagatgatagtggcagctgacaactacaagtgctcagatgagatcatatcaattgctgct
atgctttcagtgggtaattcaatcttctatcgcccaaaggacaaacaagtccatgctgac
aatgcaaggatgaattttcacactggcaatgttggggaccatattgcattgttaaaggtc
tacagttcttggaaggaaactaactactcaactcagtggtgctatgaaaattatattcag
gtcaggagtatgaaacgtgccagagatgtgagagaccagttggaggggctcttggagagg
gttgaaattgaacttgcatccaaccccaatgatttagatgcaataaagaagtctataaca
gctggtttttttccacactctgcaagactgcagaagaatggatcttatcgaacagttaaa
cacccccagactgttcacattcacccaagctcgggtttagcacaggtgcttccaaggtgg
gtgatataccatgaattggttcttacaaccaaggagtacatgagacaggttactgaacta
aagccagagtggctggtggagatagctcctcacttctaccaactgaaagatgttgaagac
cctggatcaaagaaaatgcctcgaactgaaggacgtgctgtgaaggactga

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