KEGG   Vitis vinifera (wine grape): 100245471
Entry
100245471         CDS       T01084                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase LIN-1
Organism
vvi  Vitis vinifera (wine grape)
SSDB
Motif
Pfam: ARM_LIN_C ARM_LIN ARM_LIN_2nd WD40 U-box WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 NBCH_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st zf-Nse Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_IP5PC_F Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st FPL Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 100245471
NCBI-ProteinID: XP_002279863
UniProt: F6H1L3
LinkDB
Position
18:complement(join(12310142..12310159,12310255..12310506,12310602..12310745,12310862..12310972,12311045..12311167,12311759..12311890,12312006..12312125,12312210..12312334,12312428..12312737,12312836..12313093,12313236..12313380,12313983..12315257,12315415..12315500,12315620..12316006,12316151..12316211,12316374..12317311))
AA seq 1494 aa
MAGNYRFAMDQKDIVRFLVTTVGSFIQDQLINKEQRAQHKEQCAERLAAEDGSCEKDTEV
RYSDQAVLANLDWGIDALEEAINTSNMETKLARLDHAEKMLQVCAMLNSDQRTAGVPNFY
LSAWAHLNLSYLWRLRDNVHNSVLHILEMFIVDPFFSRIDFAPELWKALFLPHMSSIVGW
YSEARHRIVMEVIPDSTDLSFTADFDQFFNESLIFSMRPDQAEKMQKLEQLYGESLDENT
RLYSKYYMDCLNFDSNTSKRAIPMLPIAEPPMTPMHEVSRSIPDYVKFGPILPKSAGFSL
ILKAKDNAREACRLNVTSKSSQNLEESVMWDLQEETIEENEDNSDYEPDSAYMDSEDKTY
QVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKTSLKISSPKSDSHCHKGP
TSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSCRKNHGHNQSISH
QNLNRQVSENSSLNENDEGSQSCISLPLSDKLTPRSRPPKDFVCPITGQIFSDAVTLETG
QTYERKAIQEWLKRGNTTCPITRQPLSASSLPKTNYVLKRLITTWKEQYPDVAQEFSYPE
TPRNSFSPPSTKEIMLASSPSCNPPDHKKSDDCTNQKCKRFMQTVVSTSPTSVISQAATE
AVINGLKPYVLCLCNSDDLQECEAAVLAIAKMWKDSKADPGIHSYLSEPTIVNGLVEILS
ASMNREVLRTSIHILSVLIFADESVGETLTNVDSDFDCLAALLKKGLAEAAVLIYQLRPA
FTQLSARNFIPSLVHLILNKNDESDNLLLVMEPKDAAIALLEQILMGGDENSRSLNAMSV
ISANGIPALIKCLDKVEGRQAIVSILLCCIHADRSCRNLIANRIDLSSVLELFHTGDDYV
RGICTKFLSELVQLNRRIFCNQILKIIKDEGAFSTMHTFLVYLQMAPMEQQPAIASLLLQ
LDLLVEPRKMSIYREEAIEALVEALHKKDFPHSQIMALDALLSLSGHLTTSGKSYTEAWL
LKIAGYDQPYHALMKSERLKIYENELTETTEEEEKAVTSWQKRVVFVLCNHEKGSIFKAL
EECLKSNSLEIAKSCLVVATWLTYMLYHLPDTGVRNVAHKSFLEPFINVLQSSKNLEEKI
LATLALNCFLNDPGALEELGAYAKCMYKTLRKLKKNSVVVSDMLKALIKLPSVDPTELWC
CDEVVELDSCSNGGILSLLPLKSWVLSGHSDGTIKVWDAGKRDLRLIQEVREHTKAVTCL
YASSSSDKLYSGSLDKTIRVWTVKPEEIHCVQVHDVKEAVYQLTANASFACFSSQGTGVN
VYSWSGVPKHINFNKNVKSLDMAEDRLYCGCTGYSIQEVDLCKSTTNTFYSGARKLLGKQ
TIYSLRIHDGLLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDFIFTASKS
GIIEVWFKETVTRVASIKIGGHGHAKIASLASDTDGEMLFAGFLDGKIQAWALD
NT seq 4485 nt   +upstreamnt  +downstreamnt
atggctggaaactacaggtttgcaatggaccaaaaggatatcgttagattcctggtcacc
acggttggaagtttcatccaagatcagttgatcaataaagaacagagagcccaacacaaa
gaacagtgtgcagagagattagcagctgaagatggaagctgtgagaaagacacagaagtt
cgatactctgatcaagcagtattggcaaatttggattgggggattgatgcccttgaagaa
gctatcaatacctccaacatggaaactaagcttgcacgattagaccatgcagaaaaaatg
ttacaagtatgtgcaatgttgaactctgaccagagaactgcaggagtccccaatttctac
ctctctgcttgggcccatctcaacctttcttacctgtggagactgcgggacaatgttcac
aattcagttcttcacattctcgagatgtttattgttgatcctttcttctcacggattgat
tttgctccagagctctggaaagctctgtttcttccacatatgagttcaattgttgggtgg
tattcagaagcaaggcacaggattgtgatggaagtgattcctgattccactgatttgtcc
tttactgcagatttcgatcaattctttaatgagtccctgatcttttccatgaggcctgat
caagcagagaaaatgcaaaagctggagcaactttatggagaatcattggatgagaataca
cggctttattcaaaatattatatggattgcttgaactttgattcaaacactagcaagaga
gcgattccgatgttgccaattgcagagccaccaatgactccaatgcatgaggtcagcagg
tcaattcccgattatgtaaaatttgggcccattctacctaagagtgctgggttttctcta
attcttaaagctaaggacaatgcaagagaagcttgcagattgaatgtcacttccaaatcc
tcacagaacctggaggagtctgttatgtgggaccttcaagaggaaacgattgaggaaaat
gaagataattcagattatgagcctgatagtgcttatatggattctgaggacaaaacatat
caagtagtatctcatagtagcatgaaaatgaacatttataaggaaatggggccaaaagta
cagccaccaaaaattaggagtcaactaccttcttcgacaagtttttcttccacggactcc
cctaaaacttctctaaagatttcatctccaaaatcagactcgcattgtcataaaggtccc
acatccgtattgcgcctcttatccagccgtgccatggattccactgtctccacctccttg
cctgtgtctccacgtttgtataaagattccagcattagctcagcagactcagatggtgaa
gtgattgagctaccaagaagctgcaggaaaaaccatggacacaatcaaagtatcagtcat
caaaatctgaatagacaagtatcagaaaatagctcccttaatgaaaatgatgaaggaagc
cagagctgcatttctctcccattatctgataaactgactcctaggtcaaggccgcctaaa
gattttgtctgccccatcacagggcagatttttagtgatgcagttacccttgaaacaggt
caaacatatgaaagaaaagcaattcaagaatggctgaaaagaggaaacacaacatgtccc
attacacggcaacctctatctgccagctcactgcccaaaacaaactatgttttgaagaga
ttaatcactacttggaaagaacaatatcctgatgttgctcaggagttctcttaccctgaa
acaccaagaaactcattcagccccccgtccacaaaagaaattatgttggcatcttctcca
tcatgtaatccccccgaccataagaagtcagatgattgtactaatcagaagtgcaaaaga
tttatgcaaacagtggtatctacttcaccaaccagtgtgatatctcaagctgctactgaa
gcggttatcaatgggttaaaaccctatgttttgtgtctctgtaattcagatgatttacaa
gagtgtgaagcagctgtgctggcaatagccaagatgtggaaagactcaaaggctgatccg
ggaattcattcttatttgtccgaaccaacaattgtgaatgggcttgtggaaatactatca
gcttccatgaacagagaagttctcagaacatcaattcacattctttctgtgctaatattt
gctgatgaaagtgtgggagagactcttaccaatgtagattctgattttgattgtctggct
gctctactaaagaaaggtcttgcagaggctgctgttcttatataccagctgaggccagca
ttcactcagctttcagctcgcaactttataccctctctagtacacctaattctgaacaaa
aatgacgaatcggataatcttctgttagtaatggagcccaaggatgctgctatagcattg
cttgagcagattttgatgggaggggatgaaaacagcagatccctcaatgctatgagtgtt
atctctgcaaacgggattcctgcattaatcaagtgtttggataaggtagaaggaaggcag
gccatcgtatccatccttttatgttgtatccatgcagatagaagttgcaggaatttgata
gcaaatagaatcgatctgtcttccgtgcttgaattatttcatactggagatgattatgtt
agaggcatatgcacaaagtttctctctgagctagttcagttaaacaggaggatattctgc
aaccagatcttgaagataattaaagatgaaggagcttttagtaccatgcacacatttctt
gtgtatctacaaatggcccccatggagcagcaacctgcaattgcttctcttcttcttcag
cttgatcttctggttgagcctcgaaagatgagcatttacagggaagaagctatagaggca
ctagttgaagcacttcacaaaaaagactttcctcattctcaaatcatggctctagatgct
ttattatctctttctggacatctgactacctcagggaagtcctacactgaagcctggtta
ctcaagatcgcaggatatgatcaaccttaccatgctttaatgaagtcggagaggctgaaa
atatatgaaaatgaactgacagagacaacggaagaggaagagaaagctgtcacttcttgg
caaaaaagagtagtttttgttctttgcaaccatgaaaaaggatccatctttaaagccttg
gaggaatgcctgaagagtaattctttagagatagcaaagtcatgccttgttgttgccaca
tggcttacatacatgctttatcatcttcctgacactggtgtaagaaatgttgctcacaag
tcattcctcgagccattcatcaatgtcctccaatcatcaaagaatcttgaggagaagatt
ttggcaacccttgctttgaattgcttccttaatgatccaggtgcattagaagaactggga
gcatatgccaagtgcatgtataaaaccttgagaaagcttaaaaagaattcagtggttgta
agtgacatgctaaaagccttgataaagctgccttctgttgatccaacagagttgtggtgt
tgtgatgaagtggttgagctagattcatgctcaaacggtgggattctgtctttgcttcct
ctaaaaagttgggttctgagcggccattctgatggaactataaaggtatgggatgctggg
aagagagacttaaggttgattcaagaagttcgtgaacacacaaaggctgtcacatgcctc
tatgcctcatcttcaagtgacaagttatatagtggttccttagacaaaacaattcgggtc
tggacggtcaaaccagaagaaattcactgtgttcaggttcatgatgtgaaggaggcggta
taccagttgacagctaatgccagttttgcatgcttctcttctcaaggaactggagtcaat
gtctacagttggtctggggttccaaaacatataaactttaacaaaaatgtcaagagcctt
gacatggcagaggatagactgtattgcggttgcactggttacagcatccaggaggttgat
ttgtgtaaatccactacaaatacattttactctggtgcaagaaaattgcttggtaaacaa
acaatatattccttgcggattcatgatggtttactctatgctggcggttcctcagtggat
ggaactgcagggaaggtgttctccctctcgaccaaggccttaactgggtctttcttgact
ggattggacatccagcgcttagctgtgaatagtgactttatattcactgccagtaaatct
gggatcattgaggtgtggtttaaggaaacagtgacaagagtagcttccattaaaatcggt
ggtcatggacatgcgaagattgcatccttggcatcagatacagatggagaaatgcttttt
gctggtttccttgatggcaagatccaggcttgggcgctcgactga

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